mRNABench PROT-LOC: Protein localisation
Protein localisation. Scored with AUPRC (%) on mRNABench Prot Loc. A linear probe over frozen embeddings, scored as the mean over ten random seeds.
Overview
Protein localisation. Scored with AUPRC (%) on mRNABench Prot Loc. A linear probe over frozen embeddings, scored as the mean over ten random seeds.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- 3UTRBERT on mRNABench PROT-LOC: Protein localisation
- AIDO.RNA on mRNABench PROT-LOC: Protein localisation
- DNABERT-S on mRNABench PROT-LOC: Protein localisation
- DNABERT2 on mRNABench PROT-LOC: Protein localisation
- ERNIE-RNA on mRNABench PROT-LOC: Protein localisation
- Evo1 on mRNABench PROT-LOC: Protein localisation
- Evo2 on mRNABench PROT-LOC: Protein localisation
- Helix-mRNA on mRNABench PROT-LOC: Protein localisation
- HyenaDNA on mRNABench PROT-LOC: Protein localisation
- Naive Baseline on mRNABench PROT-LOC: Protein localisation
- Naive Mamba on mRNABench PROT-LOC: Protein localisation
- NT on mRNABench PROT-LOC: Protein localisation
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
mRNABench PROT-LOC: Protein localisation
auprc (percent) · Higher values are better for this metric.
Every method mRNABench reports on Protein localisation, scored with AUPRC (%) on mRNABench Prot Loc.
- Naive Baseline · Method · Author-reported evaluation21.5
- Naive Mamba · Method · Author-reported evaluation29.4
- Supervised CNN · Method · Author-reported evaluation17.0
- 3UTRBERT · Configuration · Author-reported evaluation27.0
- AIDO.RNA · Configuration · Author-reported evaluation38.0
- DNABERT-S · Configuration · Author-reported evaluation31.1
- DNABERT2 · Configuration · Author-reported evaluation32.5
- ERNIE-RNA · Configuration · Author-reported evaluation33.8
- Evo1 · Configuration · Author-reported evaluation29.1
- Evo2 · Configuration · Author-reported evaluation40.8
- Helix-mRNA · Configuration · Author-reported evaluation29.3
- HyenaDNA · Configuration · Author-reported evaluation31.8
- NT · Configuration · Author-reported evaluation32.0
- Orthrus · Configuration · Author-reported evaluation39.3
- RNA-FM · Configuration · Author-reported evaluation32.2
- RNA-MSM · Configuration · Author-reported evaluation29.6
- RNABERT · Configuration · Author-reported evaluation28.0
- RNAErnie · Configuration · Author-reported evaluation29.8
- RiNALMo · Configuration · Author-reported evaluation32.7
- SpliceBERT · Configuration · Author-reported evaluation36.0
- UTR-LM · Configuration · Author-reported evaluation32.0
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
mRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, column(Prot Loc)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| Naive Baseline · Method | 21.5 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(Prot Loc) |
| Naive Mamba · Method | 29.4 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(Prot Loc) |
| Supervised CNN · Method | 17.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(Prot Loc) |
| 3UTRBERT · Configuration | 27.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(Prot Loc) |
| AIDO.RNA · Configuration | 38.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(Prot Loc) |
| DNABERT-S · Configuration | 31.1 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(Prot Loc) |
| DNABERT2 · Configuration | 32.5 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(Prot Loc) |
| ERNIE-RNA · Configuration | 33.8 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(Prot Loc) |
| Evo1 · Configuration | 29.1 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(Prot Loc) |
| Evo2 · Configuration | 40.8 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(Prot Loc) |
| Helix-mRNA · Configuration | 29.3 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(Prot Loc) |
| HyenaDNA · Configuration | 31.8 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(Prot Loc) |
| NT · Configuration | 32.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(Prot Loc) |
| Orthrus · Configuration | 39.3 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(Prot Loc) |
| RNA-FM · Configuration | 32.2 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(Prot Loc) |
| RNA-MSM · Configuration | 29.6 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(Prot Loc) |
| RNABERT · Configuration | 28.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(Prot Loc) |
| RNAErnie · Configuration | 29.8 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(Prot Loc) |
| RiNALMo · Configuration | 32.7 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(Prot Loc) |
| SpliceBERT · Configuration | 36.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(Prot Loc) |
| UTR-LM · Configuration | 32.0 percent | Not reported | Author-reported evaluation · source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(Prot Loc) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.
- Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 21 evaluations · 21 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| 3UTRBERT on mRNABench PROT-LOC: Protein localisation Configuration: 3UTRBERTTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 27.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(3UTRBERT), column(Prot Loc) Source checking is not independent reproduction. |
| AIDO.RNA on mRNABench PROT-LOC: Protein localisation Configuration: AIDO.RNATask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 38.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(AIDO.RNA), column(Prot Loc) Source checking is not independent reproduction. |
| DNABERT-S on mRNABench PROT-LOC: Protein localisation Configuration: DNABERT-STask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 31.1% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT-S), column(Prot Loc) Source checking is not independent reproduction. |
| DNABERT2 on mRNABench PROT-LOC: Protein localisation Configuration: DNABERT2Task: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 32.5% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(DNABERT2), column(Prot Loc) Source checking is not independent reproduction. |
| ERNIE-RNA on mRNABench PROT-LOC: Protein localisation Configuration: ERNIE-RNATask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 33.8% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(ERNIE-RNA), column(Prot Loc) Source checking is not independent reproduction. |
| Evo1 on mRNABench PROT-LOC: Protein localisation Configuration: Evo1Task: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.1% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo1), column(Prot Loc) Source checking is not independent reproduction. |
| Evo2 on mRNABench PROT-LOC: Protein localisation Configuration: Evo2Task: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 40.8% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Evo2), column(Prot Loc) Source checking is not independent reproduction. |
| Helix-mRNA on mRNABench PROT-LOC: Protein localisation Configuration: Helix-mRNATask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.3% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Helix-mRNA), column(Prot Loc) Source checking is not independent reproduction. |
| HyenaDNA on mRNABench PROT-LOC: Protein localisation Configuration: HyenaDNATask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 31.8% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(HyenaDNA), column(Prot Loc) Source checking is not independent reproduction. |
| Naive Baseline on mRNABench PROT-LOC: Protein localisation Method: Naive BaselineTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 21.5% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Baseline), column(Prot Loc) Source checking is not independent reproduction. |
| Naive Mamba on mRNABench PROT-LOC: Protein localisation Method: Naive MambaTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.4% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Naive Mamba), column(Prot Loc) Source checking is not independent reproduction. |
| NT on mRNABench PROT-LOC: Protein localisation Configuration: NTTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 32.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(NT), column(Prot Loc) Source checking is not independent reproduction. |
| Orthrus on mRNABench PROT-LOC: Protein localisation Configuration: OrthrusTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 39.3% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Orthrus), column(Prot Loc) Source checking is not independent reproduction. |
| RiNALMo on mRNABench PROT-LOC: Protein localisation Configuration: RiNALMoTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 32.7% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RiNALMo), column(Prot Loc) Source checking is not independent reproduction. |
| RNA-FM on mRNABench PROT-LOC: Protein localisation Configuration: RNA-FMTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 32.2% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-FM), column(Prot Loc) Source checking is not independent reproduction. |
| RNA-MSM on mRNABench PROT-LOC: Protein localisation Configuration: RNA-MSMTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.6% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNA-MSM), column(Prot Loc) Source checking is not independent reproduction. |
| RNABERT on mRNABench PROT-LOC: Protein localisation Configuration: RNABERTTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 28.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNABERT), column(Prot Loc) Source checking is not independent reproduction. |
| RNAErnie on mRNABench PROT-LOC: Protein localisation Configuration: RNAErnieTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 29.8% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(RNAErnie), column(Prot Loc) Source checking is not independent reproduction. |
| SpliceBERT on mRNABench PROT-LOC: Protein localisation Configuration: SpliceBERTTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 36.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(SpliceBERT), column(Prot Loc) Source checking is not independent reproduction. |
| Supervised CNN on mRNABench PROT-LOC: Protein localisation Method: Supervised CNNTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 17.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(Supervised CNN), column(Prot Loc) Source checking is not independent reproduction. |
| UTR-LM on mRNABench PROT-LOC: Protein localisation Configuration: UTR-LMTask: mRNABench PROT-LOC: Protein localisationDataset subset: mRNABench Prot Loc (mRNABench split) A linear probe over frozen embeddings, scored as the mean over ten random seeds. Author-reported evaluation · Evaluation metadata: source checked | ||
| 32.0% auprc Unit: percent · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedmRNABench: A curated benchmark for mature mRNA property and function prediction · Table 2, row(UTR-LM), column(Prot Loc) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-mrnabench Individual claims | mRNABench: A curated benchmark for mature mRNA property and function prediction Table 2, column(Prot Loc) Version: preprint archived 2025-07-08 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: mrnabench-association-prot-loc Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- mRNABench: A curated benchmark for mature mRNA property and function prediction · Original source · preprint archived 2025-07-08
Technical metadata and extraction receipts
Stable ID: mrnabench-task-prot-loc
- areas
- rna-transcriptomes
- tasks
- Protein localisation
- metric
- AUPRC (%)
- metric direction
- higher
- dataset
- mRNABench Prot Loc
- protocol
- A linear probe over frozen embeddings, scored as the mean over ten random seeds.
- source locator
- Table 2, column(Prot Loc)
- comparison panels
- id: mrnabench-panel-prot-loc; title: mRNABench PROT-LOC: Protein localisation; protocol id: mrnabench-task-prot-loc; dataset id: mrnabench-dataset-mrnabench-prot-loc; metric: auprc; unit: percent; direction: higher; result ids: mrnabench-result-naive-baseline-prot-loc-auprc; mrnabench-result-naive-mamba-prot-loc-auprc; mrnabench-result-supervised-cnn-prot-loc-auprc; mrnabench-result-3utrbert-prot-loc-auprc; mrnabench-result-aido-rna-prot-loc-auprc; mrnabench-result-dnabert-s-prot-loc-auprc; mrnabench-result-dnabert2-prot-loc-auprc; mrnabench-result-ernie-rna-prot-loc-auprc; mrnabench-result-evo1-prot-loc-auprc; mrnabench-result-evo2-prot-loc-auprc; mrnabench-result-helix-mrna-prot-loc-auprc; mrnabench-result-hyenadna-prot-loc-auprc; mrnabench-result-nt-prot-loc-auprc; mrnabench-result-orthrus-prot-loc-auprc; mrnabench-result-rna-fm-prot-loc-auprc; mrnabench-result-rna-msm-prot-loc-auprc; mrnabench-result-rnabert-prot-loc-auprc; mrnabench-result-rnaernie-prot-loc-auprc; mrnabench-result-rinalmo-prot-loc-auprc; mrnabench-result-splicebert-prot-loc-auprc; mrnabench-result-utr-lm-prot-loc-auprc; source ids: expansion-p3-mrnabench-2025; source locator: Table 2, column(Prot Loc); context: Every method mRNABench reports on Protein localisation, scored with AUPRC (%) on mRNABench Prot Loc.; caveats: Author-reported numbers, source checked but not independently reproduced.; Metrics alternate between AUPRC on a percentage scale and Pearson R, so figures in different columns are on different scales.; Each row is the best checkpoint of a model family, chosen by the authors, not the family's average.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: mRNABench
- subject: mRNABench PROT-LOC: part of discovery-benchmark-mrnabench
- benchmark: 3UTRBERT on mRNABench PROT-LOC: Protein localisation
- benchmark: AIDO.RNA on mRNABench PROT-LOC: Protein localisation
- benchmark: DNABERT-S on mRNABench PROT-LOC: Protein localisation
- benchmark: DNABERT2 on mRNABench PROT-LOC: Protein localisation
- benchmark: ERNIE-RNA on mRNABench PROT-LOC: Protein localisation
- benchmark: Evo1 on mRNABench PROT-LOC: Protein localisation
- benchmark: Evo2 on mRNABench PROT-LOC: Protein localisation
- benchmark: Helix-mRNA on mRNABench PROT-LOC: Protein localisation
- benchmark: HyenaDNA on mRNABench PROT-LOC: Protein localisation
- benchmark: Naive Baseline on mRNABench PROT-LOC: Protein localisation
- benchmark: Naive Mamba on mRNABench PROT-LOC: Protein localisation
- benchmark: NT on mRNABench PROT-LOC: Protein localisation
- benchmark: Orthrus on mRNABench PROT-LOC: Protein localisation
- benchmark: RiNALMo on mRNABench PROT-LOC: Protein localisation
- benchmark: RNA-FM on mRNABench PROT-LOC: Protein localisation
- benchmark: RNA-MSM on mRNABench PROT-LOC: Protein localisation
- benchmark: RNABERT on mRNABench PROT-LOC: Protein localisation
- benchmark: RNAErnie on mRNABench PROT-LOC: Protein localisation
- benchmark: SpliceBERT on mRNABench PROT-LOC: Protein localisation
- benchmark: Supervised CNN on mRNABench PROT-LOC: Protein localisation
- benchmark: UTR-LM on mRNABench PROT-LOC: Protein localisation