NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
Fitness prediction on enhancer assays, supervised, contiguous cross validation. Scored with Spearman ρ on NABench enhancer assays. Scored supervised, contiguous cross validation across the NABench enhancer assays.
Overview
Fitness prediction on enhancer assays, supervised, contiguous cross validation. Scored with Spearman ρ on NABench enhancer assays. Scored supervised, contiguous cross validation across the NABench enhancer assays.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AIDO.RNA on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- BiRNA-BERT on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Crafts on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Dnabert_6 on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Dnabert on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Enformer on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Evo_1.5_8k_base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Evo_1_8k_base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Evo_1_8k on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Evo2-7B-base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- Evo2-7B on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- GENA-LM-large on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
spearman (correlation) · Higher values are better for this metric.
Every method NABench reports on Fitness prediction on enhancer assays, supervised, contiguous cross validation, scored with Spearman ρ on NABench enhancer assays.
Evaluation protocol · NABench enhancer assays (NABench split)
- RNA-FM · Configuration · Author-reported evaluation0.095
- LucaOne · Configuration · Author-reported evaluation0.158
- RESM · Configuration · Author-reported evaluation0.123
- Enformer · Configuration · Author-reported evaluation0.336
- GENERator-3B · Configuration · Author-reported evaluation0.145
- structRFM · Configuration · Author-reported evaluation0.087
- SPACE · Configuration · Author-reported evaluation0.344
- N.T.-v2-50m · Configuration · Author-reported evaluation0.116
- Evo_1.5_8k_base · Configuration · Author-reported evaluation0.047
- Evo2-7B · Configuration · Author-reported evaluation0.110
- Crafts · Configuration · Author-reported evaluation0.049
- Evo_1_8k_base · Configuration · Author-reported evaluation0.037
- Evo_1_8k · Configuration · Author-reported evaluation0.037
- BiRNA-BERT · Configuration · Author-reported evaluation0.057
- RNAernie · Configuration · Author-reported evaluation0.074
- Evo2-7B-base · Configuration · Author-reported evaluation0.138
- GENA-LM-large · Configuration · Author-reported evaluation0.062
- HyenaDNA · Configuration · Author-reported evaluation0.049
- RiNALMo_giga · Configuration · Author-reported evaluation0.123
- GenerRNA · Configuration · Author-reported evaluation0.024
- Dnabert · Configuration · Author-reported evaluation0.064
- AIDO.RNA · Configuration · Author-reported evaluation0.015
- LucaVirus · Configuration · Author-reported evaluation0.075
- GenSLM · Configuration · Author-reported evaluation0.024
- Dnabert_6 · Configuration · Author-reported evaluation0.074
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, column(enhancer)Values, uncertainty and evidence
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
- The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 25 evaluations · 25 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AIDO.RNA on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: AIDO.RNATask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.015 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(AIDO.RNA), column(enhancer) Source checking is not independent reproduction. |
| BiRNA-BERT on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: BiRNA-BERTTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.057 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(BiRNA-BERT), column(enhancer) Source checking is not independent reproduction. |
| Crafts on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: CraftsTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.049 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Crafts), column(enhancer) Source checking is not independent reproduction. |
| Dnabert_6 on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: Dnabert_6Task: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.074 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(enhancer) Source checking is not independent reproduction. |
| Dnabert on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: DnabertTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.064 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert), column(enhancer) Source checking is not independent reproduction. |
| Enformer on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: EnformerTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.336 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Enformer), column(enhancer) Source checking is not independent reproduction. |
| Evo_1.5_8k_base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: Evo_1.5_8k_baseTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.047 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Evo_1.5_8k_base), column(enhancer) Source checking is not independent reproduction. |
| Evo_1_8k_base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: Evo_1_8k_baseTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.037 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Evo_1_8k_base), column(enhancer) Source checking is not independent reproduction. |
| Evo_1_8k on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: Evo_1_8kTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.037 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Evo_1_8k), column(enhancer) Source checking is not independent reproduction. |
| Evo2-7B-base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: Evo2-7B-baseTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.138 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Evo2-7B-base), column(enhancer) Source checking is not independent reproduction. |
| Evo2-7B on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: Evo2-7BTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.110 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Evo2-7B), column(enhancer) Source checking is not independent reproduction. |
| GENA-LM-large on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: GENA-LM-largeTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.062 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(GENA-LM-large), column(enhancer) Source checking is not independent reproduction. |
| GENERator-3B on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: GENERator-3BTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.145 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(GENERator-3B), column(enhancer) Source checking is not independent reproduction. |
| GenerRNA on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: GenerRNATask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.024 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(GenerRNA), column(enhancer) Source checking is not independent reproduction. |
| GenSLM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: GenSLMTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.024 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(GenSLM), column(enhancer) Source checking is not independent reproduction. |
| HyenaDNA on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: HyenaDNATask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.049 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(HyenaDNA), column(enhancer) Source checking is not independent reproduction. |
| LucaOne on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: LucaOneTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.158 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(LucaOne), column(enhancer) Source checking is not independent reproduction. |
| LucaVirus on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: LucaVirusTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.075 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(LucaVirus), column(enhancer) Source checking is not independent reproduction. |
| N.T.-v2-50m on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: N.T.-v2-50mTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.116 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(N.T.-v2-50m), column(enhancer) Source checking is not independent reproduction. |
| RESM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: RESMTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.123 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(RESM), column(enhancer) Source checking is not independent reproduction. |
| RiNALMo_giga on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: RiNALMo_gigaTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.123 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(RiNALMo_giga), column(enhancer) Source checking is not independent reproduction. |
| RNA-FM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: RNA-FMTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.095 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(RNA-FM), column(enhancer) Source checking is not independent reproduction. |
| RNAernie on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: RNAernieTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.074 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(RNAernie), column(enhancer) Source checking is not independent reproduction. |
| SPACE on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: SPACETask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.344 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(SPACE), column(enhancer) Source checking is not independent reproduction. |
| structRFM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation Configuration: structRFMTask: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, contiguous cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.087 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(structRFM), column(enhancer) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-nabench Individual claims | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 11, column(enhancer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: nabench-association-ccv-corr-enhancer Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-task-ccv-corr-enhancer
- areas
- rna-transcriptomes
- tasks
- Fitness prediction on enhancer assays, supervised, contiguous cross validation
- metric
- Spearman ρ
- metric direction
- higher
- dataset
- NABench enhancer assays
- protocol
- Scored supervised, contiguous cross validation across the NABench enhancer assays.
- source locator
- Table 11, column(enhancer)
- comparison panels
- id: nabench-panel-ccv-corr-enhancer; title: NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation; protocol id: nabench-task-ccv-corr-enhancer; dataset id: nabench-dataset-nabench-enhancer-assays; metric: spearman; unit: correlation; direction: higher; result ids: nabench-result-rna-fm-ccv-corr-enhancer-spearman; nabench-result-lucaone-ccv-corr-enhancer-spearman; nabench-result-resm-ccv-corr-enhancer-spearman; nabench-result-enformer-ccv-corr-enhancer-spearman; nabench-result-generator-3b-ccv-corr-enhancer-spearman; nabench-result-structrfm-ccv-corr-enhancer-spearman; nabench-result-space-ccv-corr-enhancer-spearman; nabench-result-n-t-v2-50m-ccv-corr-enhancer-spearman; nabench-result-evo-1-5-8k-base-ccv-corr-enhancer-spearman; nabench-result-evo2-7b-ccv-corr-enhancer-spearman; nabench-result-crafts-ccv-corr-enhancer-spearman; nabench-result-evo-1-8k-base-ccv-corr-enhancer-spearman; nabench-result-evo-1-8k-ccv-corr-enhancer-spearman; nabench-result-birna-bert-ccv-corr-enhancer-spearman; nabench-result-rnaernie-ccv-corr-enhancer-spearman; nabench-result-evo2-7b-base-ccv-corr-enhancer-spearman; nabench-result-gena-lm-large-ccv-corr-enhancer-spearman; nabench-result-hyenadna-ccv-corr-enhancer-spearman; nabench-result-rinalmo-giga-ccv-corr-enhancer-spearman; nabench-result-generrna-ccv-corr-enhancer-spearman; nabench-result-dnabert-ccv-corr-enhancer-spearman; nabench-result-aido-rna-ccv-corr-enhancer-spearman; nabench-result-lucavirus-ccv-corr-enhancer-spearman; nabench-result-genslm-ccv-corr-enhancer-spearman; nabench-result-dnabert-6-ccv-corr-enhancer-spearman; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 11, column(enhancer); context: Every method NABench reports on Fitness prediction on enhancer assays, supervised, contiguous cross validation, scored with Spearman ρ on NABench enhancer assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: NABench
- subject: NABench CCV-CORR-ENHANCER: part of discovery-benchmark-nabench
- benchmark: AIDO.RNA on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: BiRNA-BERT on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Crafts on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Dnabert_6 on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Dnabert on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Enformer on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Evo_1.5_8k_base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Evo_1_8k_base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Evo_1_8k on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Evo2-7B-base on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: Evo2-7B on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: GENA-LM-large on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: GENERator-3B on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: GenerRNA on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: GenSLM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: HyenaDNA on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: LucaOne on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: LucaVirus on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: N.T.-v2-50m on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: RESM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: RiNALMo_giga on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: RNA-FM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: RNAernie on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: SPACE on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation
- benchmark: structRFM on NABench CCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, contiguous cross validation