ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
Quality CA break (%) (mean). Scored with CA break (%) (mean) on CAMEO2022, 183 proteins. Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins.
Overview
Quality CA break (%) (mean). Scored with CA break (%) (mean) on CAMEO2022, 183 proteins. Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AlphaFold2 on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- EigenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- ESMFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- OpenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- RoseTTAFold2 on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
ca-break_mean (score) · Lower values are better for this metric.
Every method ProteinBench reports on Quality CA break (%) (mean), scored with CA break (%) (mean) on CAMEO2022, 183 proteins.
Evaluation protocol · CAMEO2022, 183 proteins (ProteinBench split)
- AlphaFold2 · Configuration · Author-reported evaluation0.0
- OpenFold · Configuration · Author-reported evaluation0.0
- RoseTTAFold2 · Configuration · Author-reported evaluation0.2
- ESMFold · Configuration · Author-reported evaluation0.0
- EigenFold · Configuration · Author-reported evaluation0.5
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
proteinbench primary benchmark evidence · Table 7, column(Quality CA break (%) ↓)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| AlphaFold2 · Configuration | 0.0 score | Not reported | Author-reported evaluation · source checkedproteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Quality CA break (%) ↓) |
| OpenFold · Configuration | 0.0 score | Not reported | Author-reported evaluation · source checkedproteinbench primary benchmark evidence · Table 7, row(OpenFold), column(Quality CA break (%) ↓) |
| RoseTTAFold2 · Configuration | 0.2 score | Not reported | Author-reported evaluation · source checkedproteinbench primary benchmark evidence · Table 7, row(RoseTTAFold2), column(Quality CA break (%) ↓) |
| ESMFold · Configuration | 0.0 score | Not reported | Author-reported evaluation · source checkedproteinbench primary benchmark evidence · Table 7, row(ESMFold), column(Quality CA break (%) ↓) |
| EigenFold · Configuration | 0.5 score | Not reported | Author-reported evaluation · source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Quality CA break (%) ↓) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Many of these metrics are better when lower, including scRMSD, perplexity and binding energy. The direction comes from the arrow in the paper's own header.
- Rows such as Native PDBs and RAbD are the natural reference the authors include for scale, not a competing method.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 5 evaluations · 5 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AlphaFold2 on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean) Configuration: AlphaFold2Task: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.0 ca-break_mean Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(AlphaFold2), column(Quality CA break (%) ↓) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean) Configuration: EigenFoldTask: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.5 ca-break_mean Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Quality CA break (%) ↓) Source checking is not independent reproduction. |
| ESMFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean) Configuration: ESMFoldTask: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.0 ca-break_mean Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(ESMFold), column(Quality CA break (%) ↓) Source checking is not independent reproduction. |
| OpenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean) Configuration: OpenFoldTask: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.0 ca-break_mean Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(OpenFold), column(Quality CA break (%) ↓) Source checking is not independent reproduction. |
| RoseTTAFold2 on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean) Configuration: RoseTTAFold2Task: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.2 ca-break_mean Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(RoseTTAFold2), column(Quality CA break (%) ↓) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-proteinbench Individual claims | proteinbench primary benchmark evidence Table 7, column(Quality CA break (%) ↓) Version: 2409.06744v1 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: proteinbench-association-fold-quality-ca-break-mean Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-task-fold-quality-ca-break-mean
- areas
- proteins-complexes
- tasks
- Quality CA break (%) (mean)
- metric
- CA break (%) (mean)
- metric direction
- lower
- dataset
- CAMEO2022, 183 proteins
- protocol
- Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins.
- source locator
- Table 7, column(Quality CA break (%) ↓)
- comparison panels
- id: proteinbench-panel-fold-quality-ca-break-mean; title: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean); protocol id: proteinbench-task-fold-quality-ca-break-mean; dataset id: proteinbench-dataset-cameo2022-183-proteins; metric: ca-break_mean; unit: score; direction: lower; result ids: proteinbench-result-alphafold2-fold-quality-ca-break-mean-ca-break-mean; proteinbench-result-openfold-fold-quality-ca-break-mean-ca-break-mean; proteinbench-result-rosettafold2-fold-quality-ca-break-mean-ca-break-mean; proteinbench-result-esmfold-fold-quality-ca-break-mean-ca-break-mean; proteinbench-result-eigenfold-fold-quality-ca-break-mean-ca-break-mean; source ids: expansion-p3-proteinbench; source locator: Table 7, column(Quality CA break (%) ↓); context: Every method ProteinBench reports on Quality CA break (%) (mean), scored with CA break (%) (mean) on CAMEO2022, 183 proteins.; caveats: Author-reported numbers, source checked but not independently reproduced.; Many of these metrics are better when lower, including scRMSD, perplexity and binding energy. The direction comes from the arrow in the paper's own header.; Rows such as Native PDBs and RAbD are the natural reference the authors include for scale, not a competing method.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: ProteinBench
- subject: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: part of discovery-benchmark-proteinbench
- benchmark: AlphaFold2 on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- benchmark: EigenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- benchmark: ESMFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- benchmark: OpenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- benchmark: RoseTTAFold2 on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)