EigenFold
Protein model evaluated by the ProteinBench authors under their harness.
Overview
Protein model evaluated by the ProteinBench authors under their harness.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
Release 2026-09-17-134cd1815de8 · 12 evaluations · 12 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| EigenFold on ProteinBench FOLD-ACCURACY-GDT-TS-MEAN: Accuracy GDT-TS (mean) Configuration: EigenFoldTask: ProteinBench FOLD-ACCURACY-GDT-TS-MEAN: Accuracy GDT-TS (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.703 gdt-ts_mean Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Accuracy GDT-TS ↑) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-ACCURACY-GDT-TS-MEDIAN: Accuracy GDT-TS (median) Configuration: EigenFoldTask: ProteinBench FOLD-ACCURACY-GDT-TS-MEDIAN: Accuracy GDT-TS (median)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.781 gdt-ts_median Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Accuracy GDT-TS ↑) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-ACCURACY-LDDT-MEAN: Accuracy lDDT (mean) Configuration: EigenFoldTask: ProteinBench FOLD-ACCURACY-LDDT-MEAN: Accuracy lDDT (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.737 lddt_mean Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Accuracy lDDT ↑) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-ACCURACY-LDDT-MEDIAN: Accuracy lDDT (median) Configuration: EigenFoldTask: ProteinBench FOLD-ACCURACY-LDDT-MEDIAN: Accuracy lDDT (median)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.810 lddt_median Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Accuracy lDDT ↑) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-ACCURACY-RMSD-MEAN: Accuracy RMSD (mean) Configuration: EigenFoldTask: ProteinBench FOLD-ACCURACY-RMSD-MEAN: Accuracy RMSD (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 7.65 rmsd_mean Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Accuracy RMSD ↓) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median) Configuration: EigenFoldTask: ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 3.73 rmsd_median Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Accuracy RMSD ↓) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-ACCURACY-TM-SCORE-MEAN: Accuracy TM-score (mean) Configuration: EigenFoldTask: ProteinBench FOLD-ACCURACY-TM-SCORE-MEAN: Accuracy TM-score (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.743 tm-score_mean Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Accuracy TM-score ↑) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-ACCURACY-TM-SCORE-MEDIAN: Accuracy TM-score (median) Configuration: EigenFoldTask: ProteinBench FOLD-ACCURACY-TM-SCORE-MEDIAN: Accuracy TM-score (median)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.823 tm-score_median Unit: score · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Accuracy TM-score ↑) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean) Configuration: EigenFoldTask: ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.5 ca-break_mean Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Quality CA break (%) ↓) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEDIAN: Quality CA break (%) (median) Configuration: EigenFoldTask: ProteinBench FOLD-QUALITY-CA-BREAK-MEDIAN: Quality CA break (%) (median)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.0 ca-break_median Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Quality CA break (%) ↓) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-QUALITY-CA-CLASH-MEAN: Quality CA clash (%) (mean) Configuration: EigenFoldTask: ProteinBench FOLD-QUALITY-CA-CLASH-MEAN: Quality CA clash (%) (mean)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 8.0 ca-clash_mean Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Quality CA clash (%) ↓) Source checking is not independent reproduction. |
| EigenFold on ProteinBench FOLD-QUALITY-CA-CLASH-MEDIAN: Quality CA clash (%) (median) Configuration: EigenFoldTask: ProteinBench FOLD-QUALITY-CA-CLASH-MEDIAN: Quality CA clash (%) (median)Dataset subset: CAMEO2022, 183 proteins (ProteinBench split) Structure prediction on CAMEO2022. Each cell prints the mean and the median over 183 proteins. Author-reported evaluation · Evaluation metadata: source checked | ||
| 4.6 ca-clash_median Unit: score · Direction: lower | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedproteinbench primary benchmark evidence · Table 7, row(EigenFold*), column(Quality CA clash (%) ↓) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
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Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- proteinbench primary benchmark evidence · Original source · 2409.06744v1
Technical metadata and extraction receipts
Stable ID: proteinbench-method-eigenfold
- areas
- proteins-complexes
- source locator
- Table 7, row(EigenFold*)
- missing metadata
- checkpoint revision: unreported; parameters: unextracted
Related records
- model: EigenFold on ProteinBench FOLD-ACCURACY-GDT-TS-MEAN: Accuracy GDT-TS (mean)
- model: EigenFold on ProteinBench FOLD-ACCURACY-GDT-TS-MEDIAN: Accuracy GDT-TS (median)
- model: EigenFold on ProteinBench FOLD-ACCURACY-LDDT-MEAN: Accuracy lDDT (mean)
- model: EigenFold on ProteinBench FOLD-ACCURACY-LDDT-MEDIAN: Accuracy lDDT (median)
- model: EigenFold on ProteinBench FOLD-ACCURACY-RMSD-MEAN: Accuracy RMSD (mean)
- model: EigenFold on ProteinBench FOLD-ACCURACY-RMSD-MEDIAN: Accuracy RMSD (median)
- model: EigenFold on ProteinBench FOLD-ACCURACY-TM-SCORE-MEAN: Accuracy TM-score (mean)
- model: EigenFold on ProteinBench FOLD-ACCURACY-TM-SCORE-MEDIAN: Accuracy TM-score (median)
- model: EigenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEAN: Quality CA break (%) (mean)
- model: EigenFold on ProteinBench FOLD-QUALITY-CA-BREAK-MEDIAN: Quality CA break (%) (median)
- model: EigenFold on ProteinBench FOLD-QUALITY-CA-CLASH-MEAN: Quality CA clash (%) (mean)
- model: EigenFold on ProteinBench FOLD-QUALITY-CA-CLASH-MEDIAN: Quality CA clash (%) (median)