rewire.it
benchmark · task

Protein–ligand binding affinity scoring

This paper-specific evaluation tests Protein–ligand binding affinity scoring using CASF-2016.

2 evaluations · 2 metric rows

At a glance

Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.

Data, procedure and scoring
PropertyDescription and evidence
Record typePaper-specific task; protocol incompletely extractedAK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks · Table 2, AK-score-ensemble / learning rate 0.0007 row, Scoring Pearson (R) column; Table 2, AK-score-single / learning rate 0.0007 row, Scoring Pearson (R) column
InputsCASF-2016AK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks · Table 2, AK-score-ensemble / learning rate 0.0007 row, Scoring Pearson (R) column; Table 2, AK-score-single / learning rate 0.0007 row, Scoring Pearson (R) column
AssessmentPearson RAK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks · Table 2, AK-score-ensemble / learning rate 0.0007 row, Scoring Pearson (R) column; Table 2, AK-score-single / learning rate 0.0007 row, Scoring Pearson (R) column
Recorded split or evaluation settingUnextractedAK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks · Table 2, AK-score-ensemble / learning rate 0.0007 row, Scoring Pearson (R) column; Table 2, AK-score-single / learning rate 0.0007 row, Scoring Pearson (R) column
DatasetsNot extracted or verified for this record.
OrganismsNot extracted or verified for this record.
AssaysNot extracted or verified for this record.
AdaptationNot extracted or verified for this record.
BaselinesNot extracted or verified for this record.

How it works

Reported evaluation outline

Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.

Reported evaluation outlineCASF-2016. Then: Recorded fitting or scoring procedure. Then: Assess Pearson RCASF-2016Recorded fitting or scoringprocedureAssess Pearson R
Read the diagram as text
  1. CASF-2016
  2. Recorded fitting or scoring procedure
  3. Assess Pearson R
AK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks · Table 2, AK-score-ensemble / learning rate 0.0007 row, Scoring Pearson (R) column; Table 2, AK-score-single / learning rate 0.0007 row, Scoring Pearson (R) column

Evaluation context

The existing paper extraction describes: CASF-2016 scoring-power evaluation. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.

AK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks · Table 2, AK-score-ensemble / learning rate 0.0007 row, Scoring Pearson (R) column; Table 2, AK-score-single / learning rate 0.0007 row, Scoring Pearson (R) column

Tested models and results

Release 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
AK-score-ensemble: Protein–ligand binding affinity scoring

CASF-2016 scoring-power evaluation.

Author-reported evaluation · Evaluation metadata: needs review

0.812 Pearson R

Unit: unitless · Direction: unknown

Uncertainty: not reported in legacy extract

Scored: Not reported · Eligible: Not reported

source checkedAK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks · Table 2, AK-score-ensemble / learning rate 0.0007 row, Scoring Pearson (R) column

Source checking is not independent reproduction.

AK-score-single: Protein–ligand binding affinity scoring

CASF-2016 scoring-power evaluation.

Author-reported evaluation · Evaluation metadata: needs review

0.759 Pearson R

Unit: unitless · Direction: unknown

Uncertainty: not reported in legacy extract

Scored: Not reported · Eligible: Not reported

source checkedAK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks · Table 2, AK-score-single / learning rate 0.0007 row, Scoring Pearson (R) column

Source checking is not independent reproduction.

Strengths and limitations

Profile review details

Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.

Stable record: reported-task-a78312d5df6dad

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: needs review

Download this release
Technical metadata and extraction receipts

Stable ID: reported-task-a78312d5df6dad

areas
molecular-interactions
tasks
Protein–ligand binding affinity scoring
entity level
task
version
Not reported
task
Protein–ligand binding affinity scoring
scope note
Paper-specific evaluation task; protocol completeness requires further extraction.
missing metadata
protocol version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract
Related records

Suggest a correction