This paper-specific evaluation tests Genome-wide prophage detection using LAMBDA genome-wide prophage test.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, EVO2 row, MCC column; Table 5, geNomad row, MCC column |
| Inputs | LAMBDA genome-wide prophage testLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, EVO2 row, MCC column; Table 5, geNomad row, MCC column |
| Assessment | MCCLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, EVO2 row, MCC column; Table 5, geNomad row, MCC column |
| Recorded split or evaluation setting | UnextractedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, EVO2 row, MCC column; Table 5, geNomad row, MCC column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: Genomic language model fine-tuned for prophage detection; genome-wide evaluation.; Traditional specialist comparator; genome-wide evaluation. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
LAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, EVO2 row, MCC column; Table 5, geNomad row, MCC columnRelease 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| EVO2: Genome-wide prophage detection Genomic language model fine-tuned for prophage detection; genome-wide evaluation. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.680 MCC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, EVO2 row, MCC column Source checking is not independent reproduction. |
| geNomad: Genome-wide prophage detection Model: geNomad · Benchmark: Genome-wide prophage detection · Dataset: LAMBDA genome-wide prophage test Traditional specialist comparator; genome-wide evaluation. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.794 MCC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, geNomad row, MCC column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-dd001540e0f4ecRelease 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-dd001540e0f4ec