Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
model · method
geNomad
geNomad is the method recorded for Genome-wide prophage detection. This page preserves the configuration reported by LAMBDA: A Prophage Detection Benchmark for Genomic Language Models.
At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Recorded dataset | LAMBDA genome-wide prophage testLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, geNomad row, MCC column |
| Model type | Not extracted or verified for this record. |
| Known versions | Not extracted or verified for this record. |
| Training data | Not extracted or verified for this record. |
| Context limits | Not extracted or verified for this record. |
| Access | Not extracted or verified for this record. |
| Code licence | Not extracted or verified for this record. |
| Weights licence | Not extracted or verified for this record. |
How it works
Recorded evaluation
The imported evaluation describes this procedure: Traditional specialist comparator; genome-wide evaluation.
LAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, geNomad row, MCC columnBenchmarks and results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| geNomad: Genome-wide prophage detection Model: geNomad · Benchmark: Genome-wide prophage detection · Dataset: LAMBDA genome-wide prophage test Traditional specialist comparator; genome-wide evaluation. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.794 MCC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, geNomad row, MCC column Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
- This is an evidence-limited profile. The recorded evaluation context does not establish performance on other datasets or configurations.LAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, geNomad row, MCC column
Profile review details
Reviewed the existing release record, its source pointer and linked evaluation context. This is not a fresh full-text architecture review or independent reproduction; numerical review status is unchanged.
Stable record: reported-model-d0677d52d2b9fdSources and history
Release 2026-09-16-d74d282221a9 · Record review: needs review
- LAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Original source · PMC13041943.1
Technical metadata and extraction receipts
Stable ID: reported-model-d0677d52d2b9fd
- areas
- microbes-communities
- entity level
- method
- version
- Not reported
- reported name
- geNomad
- missing metadata
- version: not_reported_in_legacy_extract; checkpoint revision: not_reported_in_legacy_extract; training data: not_reported_in_legacy_extract; licence: not_reported_in_legacy_extract