result · source checked
0.794 MCC
geNomad · MCC · LAMBDA genome-wide prophage test
- Tested model
- geNomad
- Task or benchmark
- Genome-wide prophage detection
- Dataset
- LAMBDA genome-wide prophage test
- Procedure
- Traditional specialist comparator; genome-wide evaluation.
- Evaluation
- geNomad: Genome-wide prophage detection
- Evidence
- Independent external evaluation · source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, geNomad row, MCC column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| geNomad: Genome-wide prophage detection Model: geNomad · Benchmark: Genome-wide prophage detection · Dataset: LAMBDA genome-wide prophage test Traditional specialist comparator; genome-wide evaluation. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.794 MCC Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedLAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Table 5, geNomad row, MCC column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- LAMBDA: A Prophage Detection Benchmark for Genomic Language Models · Original source · PMC13041943.1
Technical metadata and extraction receipts
Stable ID: lit-038
- areas
- microbes-communities
- tasks
- Genome-wide prophage detection
- printed value
- 0.794
- numeric value
- 0.794
- metric
- MCC
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- Table 5, geNomad row, MCC column
- review
- method: primary_xml_exact_label_cell_check; reviewer: rewire deterministic table checker v1; reviewed at: 2026-09-16T10:33:36.240Z; notes: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.; evidence: Table 5, geNomad row, MCC column; cell: 0.794; artifact sha256: 22c2e218e87dce757907f6086a0e2ad37c13f785b34fff5bea7cfa1a6c276b16; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13041943/fullTextXML
- legacy id
- lit-038
- legacy row
- id: lit-038; paper id: lambda-prophage-2026; domain id: microbes-communities; task: Genome-wide prophage detection; model: geNomad; model version: Not reported; dataset: LAMBDA genome-wide prophage test; dataset version: Not reported; split: Not reported; metric: MCC; value: 0.794; unit: unitless; uncertainty: Not reported; protocol: Traditional specialist comparator; genome-wide evaluation.; source locator: Table 5, geNomad row, MCC column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13041943/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:25:00Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: geNomad: Genome-wide prophage detection
- subject: Reported MCC for geNomad