This paper-specific evaluation tests gene fusion breakpoint classification using gene fusion breakpoint DNA sequences.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column |
| Inputs | gene fusion breakpoint DNA sequencesBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column |
| Assessment | ROC AUCBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column |
| Recorded split or evaluation setting | full test setBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: middle embedding with neural-network classifier. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
Benchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC columnRelease 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Nucleotide Transformer + NN (middle): gene fusion breakpoint classification Model: Nucleotide Transformer + NN (middle) · Benchmark: gene fusion breakpoint classification · Dataset: gene fusion breakpoint DNA sequences middle embedding with neural-network classifier Independent external evaluation · Evaluation metadata: needs review | ||
| 0.994 ROC AUC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-ee34721cf55590Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-ee34721cf55590