evaluation · needs review
Nucleotide Transformer + NN (middle): gene fusion breakpoint classification
Evaluation procedure
middle embedding with neural-network classifier
- Model
- Nucleotide Transformer + NN (middle)
- Benchmark
- gene fusion breakpoint classification
- Dataset
- gene fusion breakpoint DNA sequences
- origin
- Independent external evaluation
- configuration
- not stated in table
- protocol id
- Not reported
- dataset version
- Not reported
- split
- full test set
- population
- Not reported
- inputs
- Not reported
- adaptation
- Not reported
- metric implementation
- Not reported
- aggregation
- Not reported
- budget
- Not reported
Metadata review: needs review. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Nucleotide Transformer + NN (middle): gene fusion breakpoint classification Model: Nucleotide Transformer + NN (middle) · Benchmark: gene fusion breakpoint classification · Dataset: gene fusion breakpoint DNA sequences middle embedding with neural-network classifier Independent external evaluation · Evaluation metadata: needs review | ||
| 0.994 ROC AUC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: needs review
- Benchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Original source · journal full text in PMC
Technical metadata and extraction receipts
Stable ID: evaluation-b2-fusion-breakpoint-foundation-models-2026
- areas
- dna-genomes
- tasks
- gene fusion breakpoint classification
- origin
- independent_paper
- protocol
- middle embedding with neural-network classifier
- version
- not stated in table
- comparison
- protocol id: Not reported; dataset version: Not reported; split: full test set; population: Not reported; inputs: Not reported; adaptation: Not reported; metric implementation: Not reported; aggregation: Not reported; budget: Not reported
- missing metadata
- dataset version: not_reported_in_legacy_extract