0.994 ROC AUC
Nucleotide Transformer + NN (middle) · ROC AUC · gene fusion breakpoint DNA sequences
- Tested model
- Nucleotide Transformer + NN (middle)
- Task or benchmark
- gene fusion breakpoint classification
- Dataset
- gene fusion breakpoint DNA sequences
- Procedure
- middle embedding with neural-network classifier
- Evaluation
- Nucleotide Transformer + NN (middle): gene fusion breakpoint classification
- Evidence
- Independent external evaluation · source checkedBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Nucleotide Transformer + NN (middle): gene fusion breakpoint classification Model: Nucleotide Transformer + NN (middle) · Benchmark: gene fusion breakpoint classification · Dataset: gene fusion breakpoint DNA sequences middle embedding with neural-network classifier Independent external evaluation · Evaluation metadata: needs review | ||
| 0.994 ROC AUC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedBenchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Table 2, NT / NN (middle) row, ROC AUC column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Benchmarking genomic foundation models for binary classification of gene fusion breakpoints from DNA sequences · Original source · journal full text in PMC
Technical metadata and extraction receipts
Stable ID: b2-fusion-breakpoint-foundation-models-2026
- areas
- dna-genomes
- tasks
- gene fusion breakpoint classification
- printed value
- 0.994
- numeric value
- 0.994
- metric
- ROC AUC
- metric direction
- unknown
- unit
- fraction
- uncertainty
- Not reported
- source locator
- Table 2, NT / NN (middle) row, ROC AUC column
- review
- method: independent_ai_table_review; reviewer: Codex secondary table review; reviewed at: 2026-09-16T10:38:57.558209+00:00; notes: Matched NT jointly with NN (middle) and ROC AUC 0.994 in the full-test-set table. NT with SVM reports 0.995 and is a separate pipeline.; evidence: Original PMC XML table headers, row groups and caption inspected; printed value 0.994.; artifact sha256: 0f4d9de77f1e39cfd2164a20653d86370767da684dc22d17e09f589761abeb5f; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC13182013/fullTextXML
- legacy id
- b2-fusion-breakpoint-foundation-models-2026
- legacy row
- id: b2-fusion-breakpoint-foundation-models-2026; paper id: fusion-breakpoint-foundation-models-2026; domain id: dna-genomes; task: gene fusion breakpoint classification; model: Nucleotide Transformer + NN (middle); model version: not stated in table; dataset: gene fusion breakpoint DNA sequences; dataset version: Not reported; split: full test set; metric: ROC AUC; value: 0.994; unit: fraction; uncertainty: Not reported; protocol: middle embedding with neural-network classifier; source locator: Table 2, NT / NN (middle) row, ROC AUC column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC13182013/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:33:26Z
- missing metadata
- dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract