Configuration

MutBERT

Genomic foundation model evaluated by the GENEB authors with frozen embeddings and a probe.

Overview

Genomic foundation model evaluated by the GENEB authors with frozen embeddings and a probe.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

Release 2026-09-17-134cd1815de8 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
MutBERT on GENEB LINEAR-PROBE: Average macro-MCC across the 13 representative tasks, linear probe Configuration: MutBERTTask: GENEB LINEAR-PROBE: Average macro-MCC across the 13 representative tasks, linear probeDataset subset: GENEB representative task subset (GENEB split) Frozen embeddings scored with a probe over the thirteen representative tasks, one from each functional category (Table 7). Author-reported evaluation · Evaluation metadata: source checked
0.516 macro_mcc Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedGENEB: Why Genomic Models Are Hard to Compare · Table 8, row(MutBERT), column(Linear MCC) Source checking is not independent reproduction.
MutBERT on GENEB MLP-PROBE: Average macro-MCC across the 13 representative tasks, MLP probe Configuration: MutBERTTask: GENEB MLP-PROBE: Average macro-MCC across the 13 representative tasks, MLP probeDataset subset: GENEB representative task subset (GENEB split) Frozen embeddings scored with a probe over the thirteen representative tasks, one from each functional category (Table 7). Author-reported evaluation · Evaluation metadata: source checked
0.517 macro_mcc Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedGENEB: Why Genomic Models Are Hard to Compare · Table 8, row(MutBERT), column(MLP MCC) Source checking is not independent reproduction.

Evidence table

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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

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