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Configuration

Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)

Frozen features with a fixed alpha-10 ridge head fitted only on training rows; all 184 Rhomax by_wild_type held-out proteins scored. This selected split is not a whole FLIP2 score.

1 evaluation · 2 metric rows

Overview

Frozen features with a fixed alpha-10 ridge head fitted only on training rows; all 184 Rhomax by_wild_type held-out proteins scored. This selected split is not a whole FLIP2 score.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluations and results

1 evaluation · 2 metric rows. Different protocols are not a single leaderboard.

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Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.9548154942827918 ndcg
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

Protein composition + fixed ridge probe on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

Protein composition + fixed ridge probe: report; Protein composition + fixed ridge probe: audit · metrics.ndcg
Configuration: Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.41798958279508075 spearman
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

Protein composition + fixed ridge probe on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

Protein composition + fixed ridge probe: report; Protein composition + fixed ridge probe: audit · metrics.spearman

Source checking is not independent reproduction. Release 2026-09-22-f58a0f1d267f.

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Evidence

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Evidence table

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Claims, original sources and review scope · Release 2026-09-22-f58a0f1d267f
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Release 2026-09-22-f58a0f1d267f · Record review: source checked

2 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: rewire-local-20260921-configuration-composition22

areas
proteins-complexes
source locator
model; model_configuration; protocol_configuration.embedding_probe; execution
configuration
alphabet: ACDEFGHIKLMNPQRSTVWY; baseline id: protein-composition-probe-v1; baseline version: 1; features: log1p length, residue fractions, unknown fraction; head: protocol-owned alpha-10 ridge
execution
adapter: SequenceComposition; batch size: 32; fitting: protocol_owned_probe; inference and fit seconds: 0.010466667008586228; mode: local_adapter; prediction type: embedding
model
name: Protein composition + fixed ridge probe; training overlap: protocol-permitted training only; no pretraining
environment
architecture: arm64; container digest: unreported; container runtime: unreported; platform: macOS-26.6.2-arm64-arm-64bit; python: 3.11.13; rewirebench: 0.4.0; sdk code sha256: 9350e367b20ec48d9ce1195cb5b73c4bd98ce8530a2d1f7ba2157fc8be75fa34; sif sha256: unreported
training overlap
protocol-permitted training only; no pretraining
method role
simple statistical baseline
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