rewire.it
Dataset subset

FLIP2 Rhomax by_wild_type test subset

Predict measured Rhomax wavelengths (nm) from amino-acid sequence on all 184 held-out archived test records. This selected split is not a complete FLIP2 score.

Evaluation results

5 evaluations · 10 metric rows. Different protocols are not a single leaderboard.

Filter evaluations

Applied filters: All linked evaluations

Exact evaluated configurations and original reported results
Tested configurationProtocol and datasetFindingEvidence and details
Configuration: Amino-acid composition + fixed ridge (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.954819941821582 ndcg
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

Amino-acid composition + fixed ridge on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

Amino-acid composition + fixed ridge: local execution report (20 September 2026); Amino-acid composition + fixed ridge: automated execution audit · metrics.ndcg
Configuration: Amino-acid composition + fixed ridge (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.41818225155801514 spearman
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

Amino-acid composition + fixed ridge on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

Amino-acid composition + fixed ridge: local execution report (20 September 2026); Amino-acid composition + fixed ridge: automated execution audit · metrics.spearman
Configuration: Training-mean control (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.9206667522227658 ndcg
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

Training-mean control on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

Training-mean control: local execution report (20 September 2026); Training-mean control: automated execution audit · metrics.ndcg
Configuration: Training-mean control (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
undefined spearman
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

Training-mean control on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

Training-mean control: local execution report (20 September 2026); Training-mean control: automated execution audit · metrics.spearman
Configuration: Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.9548154942827918 ndcg
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

Protein composition + fixed ridge probe on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

Protein composition + fixed ridge probe: report; Protein composition + fixed ridge probe: audit · metrics.ndcg
Configuration: Protein composition + fixed ridge probe (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.41798958279508075 spearman
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

Protein composition + fixed ridge probe on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

Protein composition + fixed ridge probe: report; Protein composition + fixed ridge probe: audit · metrics.spearman
Configuration: ESM-2 35M frozen residue-mean embeddings + fixed ridge (Rewire) (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.9072580204736261 ndcg
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

ESM-2 35M frozen residue-mean embeddings + fixed ridge (Rewire) on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

ESM-2 35M frozen residue-mean embeddings + fixed ridge (Rewire): report; ESM-2 35M frozen residue-mean embeddings + fixed ridge (Rewire): audit · metrics.ndcg
Configuration: ESM-2 35M frozen residue-mean embeddings + fixed ridge (Rewire) (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
-0.2217595033467806 spearman
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

ESM-2 35M frozen residue-mean embeddings + fixed ridge (Rewire) on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

ESM-2 35M frozen residue-mean embeddings + fixed ridge (Rewire): report; ESM-2 35M frozen residue-mean embeddings + fixed ridge (Rewire): audit · metrics.spearman
Configuration: ESM-2 8M frozen residue-mean embeddings + fixed ridge (Rewire) (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
0.8964799835636942 ndcg
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

ESM-2 8M frozen residue-mean embeddings + fixed ridge (Rewire) on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

ESM-2 8M frozen residue-mean embeddings + fixed ridge (Rewire): report; ESM-2 8M frozen residue-mean embeddings + fixed ridge (Rewire): audit · metrics.ndcg
Configuration: ESM-2 8M frozen residue-mean embeddings + fixed ridge (Rewire) (FLIP2 Rhomax by_wild_type)Protocol: FLIP2 Rhomax by_wild_type
Dataset subset: FLIP2 Rhomax by_wild_type test subset
-0.1463506755340845 spearman
dimensionless · higher

Uncertainty: Not reported

Coverage: 184/184

Rewire evaluation · source checked
Methods, coverage and source

ESM-2 8M frozen residue-mean embeddings + fixed ridge (Rewire) on FLIP2 Rhomax by_wild_type

FLIP2 Rhomax by_wild_type

Aggregation: Not reported

ESM-2 8M frozen residue-mean embeddings + fixed ridge (Rewire): report; ESM-2 8M frozen residue-mean embeddings + fixed ridge (Rewire): audit · metrics.spearman

Source checking is not independent reproduction. Release 2026-09-22-f58a0f1d267f.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evidence

Source checking verifies the cited claim or transcription. It does not establish independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

39 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-22-f58a0f1d267f
Property and statementOriginal source and locationReview and provenance
attributes.dataset_id

flip2-rhomax-by-wild-type

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.dataset_id

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.provenance.data_verification

pinned_source_bytes

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.provenance.data_verification

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.provenance.dataset_version

zenodo-18433203-v3

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.provenance.dataset_version

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.provenance.evaluator_url

https://github.com/J-SNACKKB/FLIP/blob/62cace8735f5610e2743cf06ce0f944b37fffaa6/baselines/aggregate.py#L131-L135

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.provenance.evaluator_url

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.provenance.source_csv_sha256

8e78f6a16cd5298131dca83130d4b94cc0ab4ae9c699460880441c19a65f656f

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.provenance.source_csv_sha256

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.provenance.source_sha256

7c6d2f02cb89310378ac9897c321fbbd909fb0757ac88803dcce84f5f6b05ce3

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.provenance.source_sha256

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.provenance.source_url

https://zenodo.org/api/records/18433203/files/rhomax/by_wild_type.csv.gz/content

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.provenance.source_url

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.provenance.split_origin

Archived assignments: validation=True held out of training

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.provenance.split_origin

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.provenance.upstream_revision

62cace8735f5610e2743cf06ce0f944b37fffaa6

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

not individually reviewed

No individual claim review recorded

Audit details

Field: attributes.provenance.upstream_revision

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

attributes.selected_assay

No value recorded

Context-only references
Amino-acid composition + fixed ridge: local execution report (20 September 2026)

Original source ↗

coverage; protocol_configuration; provenance

Version: ca73fa47136d182f2d4ddb083d084712198fc0e2
Retrieved: 2026-09-20T20:54:03Z

missing or unspecified

No individual claim review recorded

Audit details

Field: attributes.selected_assay

Source artifact SHA-256: abd08d3f493428d06f43740c94e268575d755560e72120c73b294127acb395e6

Hash scope: Hash scope not separately documented; inspect source record

Inspected artifact

Sources and history

View linked audit checks and correction history

Release 2026-09-22-f58a0f1d267f · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: rewire-dataset-flip2-rhomax-by-wild-type-v3

areas
proteins-complexes
version
zenodo-18433203-v3
dataset id
flip2-rhomax-by-wild-type
selected assay
Not reported
source locator
coverage; protocol_configuration; provenance
test count
184
split counts
test: 184; train: 584; validation: 116
provenance
data verification: pinned_source_bytes; dataset version: zenodo-18433203-v3; evaluator url: https://github.com/J-SNACKKB/FLIP/blob/62cace8735f5610e2743cf06ce0f944b37fffaa6/baselines/aggregate.py#L131-L135; source csv sha256: 8e78f6a16cd5298131dca83130d4b94cc0ab4ae9c699460880441c19a65f656f; source sha256: 7c6d2f02cb89310378ac9897c321fbbd909fb0757ac88803dcce84f5f6b05ce3; source url: https://zenodo.org/api/records/18433203/files/rhomax/by_wild_type.csv.gz/content; split origin: Archived assignments: validation=True held out of training; upstream revision: 62cace8735f5610e2743cf06ce0f944b37fffaa6
source evidence
local predictions file sha256: 72ea3c506b8645ae6020207f904fbd5c0b09549cd125fcdcabfb487e68681b9c; local prepared file sha256: df996aee84bd5ed3e6381f9f6db864a377ab0b4809a9a48ff146d06a3dc069df; local report sha256: f2f68e3eb062391f1f1a2329dc19b68a223fbace6f199118161a082b0e7e1fd9; provenance: data verification: pinned_source_bytes; dataset version: zenodo-18433203-v3; evaluator url: https://github.com/J-SNACKKB/FLIP/blob/62cace8735f5610e2743cf06ce0f944b37fffaa6/baselines/aggregate.py#L131-L135; source csv sha256: 8e78f6a16cd5298131dca83130d4b94cc0ab4ae9c699460880441c19a65f656f; source sha256: 7c6d2f02cb89310378ac9897c321fbbd909fb0757ac88803dcce84f5f6b05ce3; source url: https://zenodo.org/api/records/18433203/files/rhomax/by_wild_type.csv.gz/content; split origin: Archived assignments: validation=True held out of training; upstream revision: 62cace8735f5610e2743cf06ce0f944b37fffaa6; retrieval: Reused local source bytes from prior recorded acquisition; checked against package pins before execution; retrieved from: https://flip.protein.properties/assets/splits/rhomax/by_wild_type.csv.gz; source bytes note: Official mirror gzip differs from Zenodo gzip; decompressed CSV matches pinned Zenodo v3 bytes.; source sha256: 7c6d2f02cb89310378ac9897c321fbbd909fb0757ac88803dcce84f5f6b05ce3; source url: https://zenodo.org/api/records/18433203/files/rhomax/by_wild_type.csv.gz/content; split counts: test: 184; train: 584; validation: 116; verified at: 2026-09-20T20:46:19.173809+00:00
subset scope
All selected test rows; this is not the whole benchmark suite.
Related records

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