Clathrin independent test: selected-embedding classifiers
Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage.
Dataset and evaluation context
A dataset supplies biological observations. The evaluation protocol defines how those observations are split, used and scored.
Evaluation results
Release 2026-09-17-d277315f7d76 · 13 evaluations · 78 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DT: Clathrin independent test: selected-embedding classifiers Configuration: DTProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.715 ACC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row DT, column ACC; XML row2 column2 Source checking is not independent reproduction. |
| 0.551 SP Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row DT, column SP; XML row2 column4 Source checking is not independent reproduction. |
| 0.726 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row DT, column AUC; XML row2 column7 Source checking is not independent reproduction. |
| RF: Clathrin independent test: selected-embedding classifiers Configuration: RFProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.884 SP Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row RF, column SP; XML row7 column4 Source checking is not independent reproduction. |
| 0.912 F1 Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row RF, column F1; XML row7 column6 Source checking is not independent reproduction. |
| 0.894 ACC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row RF, column ACC; XML row7 column2 Source checking is not independent reproduction. |
| 0.959 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row RF, column AUC; XML row7 column7 Source checking is not independent reproduction. |
| PLM-CLA: Clathrin independent test: selected-embedding classifiers Configuration: PLM-CLAProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.917 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLM-CLA, column MCC; XML row14 column5 Source checking is not independent reproduction. |
| 0.949 F1 Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLM-CLA, column F1; XML row14 column6 Source checking is not independent reproduction. |
| 0.961 ACC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLM-CLA, column ACC; XML row14 column2 Source checking is not independent reproduction. |
| PLS: Clathrin independent test: selected-embedding classifiers Configuration: PLSProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.690 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLS, column MCC; XML row4 column5 Source checking is not independent reproduction. |
| 0.845 SN Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row PLS, column SN; XML row4 column3 Source checking is not independent reproduction. |
| LR: Clathrin independent test: selected-embedding classifiers Configuration: LRProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.747 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row LR, column MCC; XML row8 column5 Source checking is not independent reproduction. |
| 0.884 SP Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row LR, column SP; XML row8 column4 Source checking is not independent reproduction. |
| ADA: Clathrin independent test: selected-embedding classifiers Configuration: ADAProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.877 ACC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row ADA, column ACC; XML row5 column2 Source checking is not independent reproduction. |
| 0.739 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row ADA, column MCC; XML row5 column5 Source checking is not independent reproduction. |
| 0.918 SN Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row ADA, column SN; XML row5 column3 Source checking is not independent reproduction. |
| NB: Clathrin independent test: selected-embedding classifiers Configuration: NBProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.773 SN Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row NB, column SN; XML row3 column3 Source checking is not independent reproduction. |
| 0.868 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row NB, column AUC; XML row3 column7 Source checking is not independent reproduction. |
| SVM: Clathrin independent test: selected-embedding classifiers Configuration: SVMProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.942 F1 Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row SVM, column F1; XML row13 column6 Source checking is not independent reproduction. |
| 0.964 SN Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row SVM, column SN; XML row13 column3 Source checking is not independent reproduction. |
| MLP: Clathrin independent test: selected-embedding classifiers Configuration: MLPProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.946 F1 Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row MLP, column F1; XML row12 column6 Source checking is not independent reproduction. |
| ET: Clathrin independent test: selected-embedding classifiers Configuration: ETProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.764 MCC Unit: dimensionless · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row ET, column MCC; XML row10 column5 Source checking is not independent reproduction. |
| XGB: Clathrin independent test: selected-embedding classifiers Configuration: XGBProtocol: Clathrin independent test: selected-embedding classifiers (clathrin protein classification)Dataset: Clathrin independent test: selected-embedding classifiers Conventional classifiers and PLM-CLA compared using paper-selected features. CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.877 ACC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row XGB, column ACC; XML row11 column2 Source checking is not independent reproduction. |
| 0.956 AUC Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedAdvancing the accuracy of clathrin protein prediction through multi-source protein language models · Table 3, row XGB, column AUC; XML row11 column7 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
6 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.reported_population No value recorded Context-only references | Advancing the accuracy of clathrin protein prediction through multi-source protein language models Table 3: ACC, Clathrin independent test: selected-embedding classifiers Version: journal full text in PMC | missing or unspecified No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3: ACC, Clathrin independent test: selected-embedding classifiers Context-only references | Advancing the accuracy of clathrin protein prediction through multi-source protein language models Table 3: ACC, Clathrin independent test: selected-embedding classifiers Version: journal full text in PMC | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.split CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts. Context-only references | Advancing the accuracy of clathrin protein prediction through multi-source protein language models Table 3: ACC, Clathrin independent test: selected-embedding classifiers Version: journal full text in PMC | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.subset Clathrin independent test: selected-embedding classifiers Context-only references | Advancing the accuracy of clathrin protein prediction through multi-source protein language models Table 3: ACC, Clathrin independent test: selected-embedding classifiers Version: journal full text in PMC | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description Dataset and cohort used in the cited comparison. Dataset population counts do not establish successful prediction coverage. Context-only references | Advancing the accuracy of clathrin protein prediction through multi-source protein language models Table 3: ACC, Clathrin independent test: selected-embedding classifiers Version: journal full text in PMC | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name Clathrin independent test: selected-embedding classifiers Context-only references | Advancing the accuracy of clathrin protein prediction through multi-source protein language models Table 3: ACC, Clathrin independent test: selected-embedding classifiers Version: journal full text in PMC | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- Advancing the accuracy of clathrin protein prediction through multi-source protein language models · Original source · journal full text in PMC
Technical metadata and extraction receipts
Stable ID: paper-dataset-a1836de18515f3ab55
- areas
- proteins-complexes
- tasks
- clathrin protein classification
- split
- CLA-IND 0.6 independent test from Shoombuatong 2024 dataset; source Table 1 carries cohort counts.
- subset
- Clathrin independent test: selected-embedding classifiers
- reported population
- Not reported
- source locator
- Table 3: ACC, Clathrin independent test: selected-embedding classifiers
- missing metadata
- manifest: unextracted; scored count: unreported
- entity classification
- review date: 2026-09-17; rationale: This record identifies a biological data collection or source-labelled evaluation cohort. Keep its dataset identity; split, assay, taxonomic level, candidate restrictions and comparison context remain attributes rather than automatically becoming new entity kinds.; source ids: part2-clathrin-plm-2025; source locator: Table 3: ACC, Clathrin independent test: selected-embedding classifiers; ambiguities: None recorded
Related records
- dataset: RF: Clathrin independent test: selected-embedding classifiers
- dataset: NB: Clathrin independent test: selected-embedding classifiers
- dataset: LR: Clathrin independent test: selected-embedding classifiers
- dataset: SVM: Clathrin independent test: selected-embedding classifiers
- dataset: PLM-CLA: Clathrin independent test: selected-embedding classifiers
- dataset: PLS: Clathrin independent test: selected-embedding classifiers
- dataset: MLP: Clathrin independent test: selected-embedding classifiers
- dataset: KNN: Clathrin independent test: selected-embedding classifiers
- dataset: ET: Clathrin independent test: selected-embedding classifiers
- dataset: LDA: Clathrin independent test: selected-embedding classifiers
- dataset: DT: Clathrin independent test: selected-embedding classifiers
- dataset: XGB: Clathrin independent test: selected-embedding classifiers
- dataset: ADA: Clathrin independent test: selected-embedding classifiers