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Dataset subset

NABench aptamer assays (NABench split)

The split of NABench aptamer assays that NABench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evaluation results

Release 2026-09-17-134cd1815de8 · 130 evaluations · 130 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
AIDO.RNA on NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.218 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(AIDO.RNA), column(aptamer)

Source checking is not independent reproduction.

AIDO.RNA on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot

Scored few-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.232 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(AIDO.RNA), column(aptamer)

Source checking is not independent reproduction.

AIDO.RNA on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.480 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(AIDO.RNA), column(aptamer)

Source checking is not independent reproduction.

AIDO.RNA on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.578 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(AIDO.RNA), column(aptamer)

Source checking is not independent reproduction.

AIDO.RNA on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.140 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(AIDO.RNA), column(aptamer)

Source checking is not independent reproduction.

BiRNA-BERT on NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.095 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(BiRNA-BERT), column(aptamer)

Source checking is not independent reproduction.

BiRNA-BERT on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot

Scored few-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.264 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(BiRNA-BERT), column(aptamer)

Source checking is not independent reproduction.

BiRNA-BERT on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.458 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(BiRNA-BERT), column(aptamer)

Source checking is not independent reproduction.

BiRNA-BERT on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.559 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(BiRNA-BERT), column(aptamer)

Source checking is not independent reproduction.

BiRNA-BERT on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.089 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(BiRNA-BERT), column(aptamer)

Source checking is not independent reproduction.

Crafts on NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.173 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Crafts), column(aptamer)

Source checking is not independent reproduction.

Crafts on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot

Scored few-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.217 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Crafts), column(aptamer)

Source checking is not independent reproduction.

Crafts on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.566 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Crafts), column(aptamer)

Source checking is not independent reproduction.

Crafts on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.621 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Crafts), column(aptamer)

Source checking is not independent reproduction.

Crafts on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.215 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Crafts), column(aptamer)

Source checking is not independent reproduction.

Dnabert_6 on NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.173 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(aptamer)

Source checking is not independent reproduction.

Dnabert_6 on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot

Scored few-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.255 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(aptamer)

Source checking is not independent reproduction.

Dnabert_6 on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.263 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(aptamer)

Source checking is not independent reproduction.

Dnabert_6 on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.559 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Dnabert_6), column(aptamer)

Source checking is not independent reproduction.

Dnabert_6 on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.121 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Dnabert_6), column(aptamer)

Source checking is not independent reproduction.

Dnabert on NABench CCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.080 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert), column(aptamer)

Source checking is not independent reproduction.

Dnabert on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot

Scored few-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.212 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert), column(aptamer)

Source checking is not independent reproduction.

Dnabert on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.426 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert), column(aptamer)

Source checking is not independent reproduction.

Dnabert on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.589 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Dnabert), column(aptamer)

Source checking is not independent reproduction.

Dnabert on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot

Scored zero-shot across the NABench aptamer assays.

Author-reported evaluation · Evaluation metadata: source checked

0.208 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Dnabert), column(aptamer)

Source checking is not independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-134cd1815de8
Property and statementOriginal source and locationReview and provenance
description

The split of NABench aptamer assays that NABench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.

Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

No field-specific location recorded

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

name

NABench aptamer assays (NABench split)

Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

No field-specific location recorded

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

Release 2026-09-17-134cd1815de8 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: nabench-dataset-nabench-aptamer-assays

areas
rna-transcriptomes
missing metadata
version: unreported; url: unextracted
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