Task

NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot

Fitness prediction on aptamer assays, zero-shot. Scored with Spearman ρ on NABench aptamer assays. Scored zero-shot across the NABench aptamer assays.

27 evaluations · 27 metric rows

Overview

Fitness prediction on aptamer assays, zero-shot. Scored with Spearman ρ on NABench aptamer assays. Scored zero-shot across the NABench aptamer assays.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluation design

Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.

Benchmarks

NABench

These source-backed links do not make different protocols or scores interchangeable.

Recorded evaluations

Each evaluation records what was tested and under which conditions.

Explore all linked results

Run instructions

No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

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Published comparisons

Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.

Comparison and metric

NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot

spearman (correlation) · Higher values are better for this metric.

Every method NABench reports on Fitness prediction on aptamer assays, zero-shot, scored with Spearman ρ on NABench aptamer assays.

Evaluation protocol · NABench aptamer assays (NABench split)

RNA-FM · Configuration · Author-reported evaluation0.167
LucaOne · Configuration · Author-reported evaluation0.112
RESM · Configuration · Author-reported evaluation0.105
Enformer · Configuration · Author-reported evaluation0.197
GENERator-3B · Configuration · Author-reported evaluation0.145
structRFM · Configuration · Author-reported evaluation0.181
SPACE · Configuration · Author-reported evaluation0.111
N.T.-v2-50m · Configuration · Author-reported evaluation0.092
Evo_1.5_8k_base · Configuration · Author-reported evaluation0.180
Evo2-7B · Configuration · Author-reported evaluation0.066
Crafts · Configuration · Author-reported evaluation0.215
Evo_1_8k_base · Configuration · Author-reported evaluation0.201
Evo_1_8k · Configuration · Author-reported evaluation0.201
BiRNA-BERT · Configuration · Author-reported evaluation0.089
RNAernie · Configuration · Author-reported evaluation0.080
Evo2-7B-base · Configuration · Author-reported evaluation0.079
GENA-LM-large · Configuration · Author-reported evaluation0.158
HyenaDNA · Configuration · Author-reported evaluation0.058
RiNALMo_giga · Configuration · Author-reported evaluation0.128
GenerRNA · Configuration · Author-reported evaluation0.171
Dnabert · Configuration · Author-reported evaluation0.208
AIDO.RNA · Configuration · Author-reported evaluation0.140
N.T.-500m · Configuration · Author-reported evaluation0.001
LucaVirus · Configuration · Author-reported evaluation0.168
N.T.-v2-500m · Configuration · Author-reported evaluation0.081
GenSLM · Configuration · Author-reported evaluation0.208
Dnabert_6 · Configuration · Author-reported evaluation0.121

Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.

NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, column(aptamer)

Values, uncertainty and evidence

spearman: original source values
Tested entity	Printed value	Uncertainty	Evidence
RNA-FM · Configuration	0.167 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(RNA-FM), column(aptamer)
LucaOne · Configuration	0.112 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(LucaOne), column(aptamer)
RESM · Configuration	0.105 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(RESM), column(aptamer)
Enformer · Configuration	0.197 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Enformer), column(aptamer)
GENERator-3B · Configuration	0.145 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(GENERator-3B), column(aptamer)
structRFM · Configuration	0.181 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(structRFM), column(aptamer)
SPACE · Configuration	0.111 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(SPACE), column(aptamer)
N.T.-v2-50m · Configuration	0.092 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-v2-50m), column(aptamer)
Evo_1.5_8k_base · Configuration	0.180 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo_1.5_8k_base), column(aptamer)
Evo2-7B · Configuration	0.066 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo2-7B), column(aptamer)
Crafts · Configuration	0.215 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Crafts), column(aptamer)
Evo_1_8k_base · Configuration	0.201 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo_1_8k_base), column(aptamer)
Evo_1_8k · Configuration	0.201 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo_1_8k), column(aptamer)
BiRNA-BERT · Configuration	0.089 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(BiRNA-BERT), column(aptamer)
RNAernie · Configuration	0.080 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(RNAernie), column(aptamer)
Evo2-7B-base · Configuration	0.079 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo2-7B-base), column(aptamer)
GENA-LM-large · Configuration	0.158 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(GENA-LM-large), column(aptamer)
HyenaDNA · Configuration	0.058 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(HyenaDNA), column(aptamer)
RiNALMo_giga · Configuration	0.128 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(RiNALMo_giga), column(aptamer)
GenerRNA · Configuration	0.171 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(GenerRNA), column(aptamer)
Dnabert · Configuration	0.208 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Dnabert), column(aptamer)
AIDO.RNA · Configuration	0.140 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(AIDO.RNA), column(aptamer)
N.T.-500m · Configuration	0.001 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-500m), column(aptamer)
LucaVirus · Configuration	0.168 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(LucaVirus), column(aptamer)
N.T.-v2-500m · Configuration	0.081 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-v2-500m), column(aptamer)
GenSLM · Configuration	0.208 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(GenSLM), column(aptamer)
Dnabert_6 · Configuration	0.121 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Dnabert_6), column(aptamer)

Scope and limitations

Author-reported numbers, source checked but not independently reproduced.
Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.

Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.

Tested entities and results

Release 2026-09-17-134cd1815de8 · 27 evaluations · 27 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
AIDO.RNA on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: AIDO.RNATask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.140 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(AIDO.RNA), column(aptamer) Source checking is not independent reproduction.
BiRNA-BERT on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: BiRNA-BERTTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.089 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(BiRNA-BERT), column(aptamer) Source checking is not independent reproduction.
Crafts on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: CraftsTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.215 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Crafts), column(aptamer) Source checking is not independent reproduction.
Dnabert_6 on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Dnabert_6Task: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.121 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Dnabert_6), column(aptamer) Source checking is not independent reproduction.
Dnabert on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: DnabertTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.208 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Dnabert), column(aptamer) Source checking is not independent reproduction.
Enformer on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: EnformerTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.197 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Enformer), column(aptamer) Source checking is not independent reproduction.
Evo_1.5_8k_base on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo_1.5_8k_baseTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.180 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo_1.5_8k_base), column(aptamer) Source checking is not independent reproduction.
Evo_1_8k_base on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo_1_8k_baseTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.201 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo_1_8k_base), column(aptamer) Source checking is not independent reproduction.
Evo_1_8k on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo_1_8kTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.201 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo_1_8k), column(aptamer) Source checking is not independent reproduction.
Evo2-7B-base on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo2-7B-baseTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.079 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo2-7B-base), column(aptamer) Source checking is not independent reproduction.
Evo2-7B on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo2-7BTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.066 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Evo2-7B), column(aptamer) Source checking is not independent reproduction.
GENA-LM-large on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: GENA-LM-largeTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.158 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(GENA-LM-large), column(aptamer) Source checking is not independent reproduction.
GENERator-3B on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: GENERator-3BTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.145 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(GENERator-3B), column(aptamer) Source checking is not independent reproduction.
GenerRNA on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: GenerRNATask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.171 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(GenerRNA), column(aptamer) Source checking is not independent reproduction.
GenSLM on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: GenSLMTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.208 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(GenSLM), column(aptamer) Source checking is not independent reproduction.
HyenaDNA on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: HyenaDNATask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.058 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(HyenaDNA), column(aptamer) Source checking is not independent reproduction.
LucaOne on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: LucaOneTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.112 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(LucaOne), column(aptamer) Source checking is not independent reproduction.
LucaVirus on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: LucaVirusTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.168 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(LucaVirus), column(aptamer) Source checking is not independent reproduction.
N.T.-500m on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: N.T.-500mTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.001 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-500m), column(aptamer) Source checking is not independent reproduction.
N.T.-v2-500m on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.081 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-v2-500m), column(aptamer) Source checking is not independent reproduction.
N.T.-v2-50m on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: N.T.-v2-50mTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.092 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-v2-50m), column(aptamer) Source checking is not independent reproduction.
RESM on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: RESMTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.105 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(RESM), column(aptamer) Source checking is not independent reproduction.
RiNALMo_giga on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: RiNALMo_gigaTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.128 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(RiNALMo_giga), column(aptamer) Source checking is not independent reproduction.
RNA-FM on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: RNA-FMTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.167 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(RNA-FM), column(aptamer) Source checking is not independent reproduction.
RNAernie on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: RNAernieTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked
0.080 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(RNAernie), column(aptamer) Source checking is not independent reproduction.

Evidence table

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Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-134cd1815de8
Property and statement	Original source and location	Review and provenance
Relationship: part of discovery-benchmark-nabench Individual claims	NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Original source ↗ Table 7, column(aptamer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 Retrieved: 2026-09-17T08:06:28.183421+00:00	source checked automated source review · 2026-09-18 Audit details Primary-source transcription with no human sign-off and no independent reproduction. Field: `links:part_of:discovery-benchmark-nabench` Claim: nabench-association-zs-corr-aptamer Source artifact SHA-256: `fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-134cd1815de8 · Record review: source checked

1 source records and release history

NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256

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Technical metadata and extraction receipts

Stable ID: nabench-task-zs-corr-aptamer

areas: rna-transcriptomes
tasks: Fitness prediction on aptamer assays, zero-shot
metric: Spearman ρ
metric direction: higher
dataset: NABench aptamer assays
protocol: Scored zero-shot across the NABench aptamer assays.
source locator: Table 7, column(aptamer)
comparison panels: id: nabench-panel-zs-corr-aptamer; title: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot; protocol id: nabench-task-zs-corr-aptamer; dataset id: nabench-dataset-nabench-aptamer-assays; metric: spearman; unit: correlation; direction: higher; result ids: nabench-result-rna-fm-zs-corr-aptamer-spearman; nabench-result-lucaone-zs-corr-aptamer-spearman; nabench-result-resm-zs-corr-aptamer-spearman; nabench-result-enformer-zs-corr-aptamer-spearman; nabench-result-generator-3b-zs-corr-aptamer-spearman; nabench-result-structrfm-zs-corr-aptamer-spearman; nabench-result-space-zs-corr-aptamer-spearman; nabench-result-n-t-v2-50m-zs-corr-aptamer-spearman; nabench-result-evo-1-5-8k-base-zs-corr-aptamer-spearman; nabench-result-evo2-7b-zs-corr-aptamer-spearman; nabench-result-crafts-zs-corr-aptamer-spearman; nabench-result-evo-1-8k-base-zs-corr-aptamer-spearman; nabench-result-evo-1-8k-zs-corr-aptamer-spearman; nabench-result-birna-bert-zs-corr-aptamer-spearman; nabench-result-rnaernie-zs-corr-aptamer-spearman; nabench-result-evo2-7b-base-zs-corr-aptamer-spearman; nabench-result-gena-lm-large-zs-corr-aptamer-spearman; nabench-result-hyenadna-zs-corr-aptamer-spearman; nabench-result-rinalmo-giga-zs-corr-aptamer-spearman; nabench-result-generrna-zs-corr-aptamer-spearman; nabench-result-dnabert-zs-corr-aptamer-spearman; nabench-result-aido-rna-zs-corr-aptamer-spearman; nabench-result-n-t-500m-zs-corr-aptamer-spearman; nabench-result-lucavirus-zs-corr-aptamer-spearman; nabench-result-n-t-v2-500m-zs-corr-aptamer-spearman; nabench-result-genslm-zs-corr-aptamer-spearman; nabench-result-dnabert-6-zs-corr-aptamer-spearman; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 7, column(aptamer); context: Every method NABench reports on Fitness prediction on aptamer assays, zero-shot, scored with Spearman ρ on NABench aptamer assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18

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