N.T.-v2-500m
Nucleotide foundation model evaluated by the NABench authors under their fitness prediction protocol.
Overview
Nucleotide foundation model evaluated by the NABench authors under their fitness prediction protocol.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
Release 2026-09-17-134cd1815de8 · 27 evaluations · 27 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| N.T.-v2-500m on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot Configuration: N.T.-v2-500mTask: NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shotDataset subset: NABench aptamer assays (NABench split) Scored few-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.166 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-500m), column(aptamer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot Configuration: N.T.-v2-500mTask: NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shotDataset subset: NABench enhancer assays (NABench split) Scored few-shot across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.053 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-500m), column(enhancer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot Configuration: N.T.-v2-500mTask: NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shotDataset subset: NABench mRNA assays (NABench split) Scored few-shot across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.256 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-500m), column(mRNA) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot Configuration: N.T.-v2-500mTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split) Scored few-shot across the NABench promoter assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.071 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-500m), column(promoter) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot Configuration: N.T.-v2-500mTask: NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shotDataset subset: NABench ribozyme assays (NABench split) Scored few-shot across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.135 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-500m), column(ribozyme) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation Configuration: N.T.-v2-500mTask: NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validationDataset subset: NABench aptamer assays (NABench split) Scored supervised, random cross validation across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.360 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(aptamer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation Configuration: N.T.-v2-500mTask: NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validationDataset subset: NABench enhancer assays (NABench split) Scored supervised, random cross validation across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.210 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(enhancer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: N.T.-v2-500mTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.560 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(mRNA) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation Configuration: N.T.-v2-500mTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split) Scored supervised, random cross validation across the NABench promoter assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.636 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(promoter) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: N.T.-v2-500mTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.429 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(ribozyme) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation Configuration: N.T.-v2-500mTask: NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validationDataset subset: NABench tRNA assays (NABench split) Scored supervised, random cross validation across the NABench tRNA assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.433 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(tRNA) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ Configuration: N.T.-v2-500mTask: NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.564 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Few-shot Spearman ρ) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: N.T.-v2-500mTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.626 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: N.T.-v2-500mTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.526 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Zero-shot AUC) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ Configuration: N.T.-v2-500mTask: NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.039 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Zero-shot Spearman ρ) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC Configuration: N.T.-v2-500mTask: NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.027 mcc Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Zero-shot MCC) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: N.T.-v2-500mTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.195 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.524 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(N.T.-v2-500m), column(aptamer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-AUC-ENHANCER: Fitness prediction on enhancer assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-AUC-ENHANCER: Fitness prediction on enhancer assays, zero-shotDataset subset: NABench enhancer assays (NABench split) Scored zero-shot across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.528 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(N.T.-v2-500m), column(enhancer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-AUC-MRNA: Fitness prediction on mRNA assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-AUC-MRNA: Fitness prediction on mRNA assays, zero-shotDataset subset: NABench mRNA assays (NABench split) Scored zero-shot across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.521 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(N.T.-v2-500m), column(mRNA) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-AUC-PROMOTER: Fitness prediction on promoter assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-AUC-PROMOTER: Fitness prediction on promoter assays, zero-shotDataset subset: NABench promoter assays (NABench split) Scored zero-shot across the NABench promoter assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.573 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(N.T.-v2-500m), column(promoter) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shotDataset subset: NABench ribozyme assays (NABench split) Scored zero-shot across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.537 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(N.T.-v2-500m), column(ribozyme) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.081 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-v2-500m), column(aptamer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shotDataset subset: NABench enhancer assays (NABench split) Scored zero-shot across the NABench enhancer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.006 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-v2-500m), column(enhancer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-CORR-MRNA: Fitness prediction on mRNA assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-CORR-MRNA: Fitness prediction on mRNA assays, zero-shotDataset subset: NABench mRNA assays (NABench split) Scored zero-shot across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.074 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(N.T.-v2-500m), column(mRNA) Source checking is not independent reproduction. |
Evidence table
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One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
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Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-method-n-t-v2-500m
- areas
- rna-transcriptomes
- source locator
- Table 7, row(N.T.-v2-500m)
- missing metadata
- checkpoint revision: unreported; parameters: unextracted
Related records
- model: N.T.-v2-500m on NABench FS-CORR-APTAMER: Fitness prediction on aptamer assays, few-shot
- model: N.T.-v2-500m on NABench FS-CORR-ENHANCER: Fitness prediction on enhancer assays, few-shot
- model: N.T.-v2-500m on NABench FS-CORR-MRNA: Fitness prediction on mRNA assays, few-shot
- model: N.T.-v2-500m on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
- model: N.T.-v2-500m on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot
- model: N.T.-v2-500m on NABench RCV-CORR-APTAMER: Fitness prediction on aptamer assays, supervised, random cross validation
- model: N.T.-v2-500m on NABench RCV-CORR-ENHANCER: Fitness prediction on enhancer assays, supervised, random cross validation
- model: N.T.-v2-500m on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation
- model: N.T.-v2-500m on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
- model: N.T.-v2-500m on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- model: N.T.-v2-500m on NABench RCV-CORR-TRNA: Fitness prediction on tRNA assays, supervised, random cross validation
- model: N.T.-v2-500m on NABench SELEX-FS: Overall fitness prediction on NABench SELEX assays, Few-shot Spearman ρ
- model: N.T.-v2-500m on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- model: N.T.-v2-500m on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- model: N.T.-v2-500m on NABench SELEX-ZS-CORR: Overall fitness prediction on NABench SELEX assays, Zero-shot Spearman ρ
- model: N.T.-v2-500m on NABench SELEX-ZS-MCC: Overall fitness prediction on NABench SELEX assays, Zero-shot MCC
- model: N.T.-v2-500m on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- model: N.T.-v2-500m on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-AUC-ENHANCER: Fitness prediction on enhancer assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-AUC-MRNA: Fitness prediction on mRNA assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-AUC-PROMOTER: Fitness prediction on promoter assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-CORR-APTAMER: Fitness prediction on aptamer assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-CORR-ENHANCER: Fitness prediction on enhancer assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-CORR-MRNA: Fitness prediction on mRNA assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-CORR-PROMOTER: Fitness prediction on promoter assays, zero-shot
- model: N.T.-v2-500m on NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot