NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ. Scored with Random cross validation Spearman ρ on NABench SELEX assays. Aggregated by the NABench authors across NABench SELEX assays.
Overview
Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ. Scored with Random cross validation Spearman ρ on NABench SELEX assays. Aggregated by the NABench authors across NABench SELEX assays.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AIDO.RNA on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- BiRNA-BERT on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Crafts on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Dnabert_6 on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Dnabert on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Enformer on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Evo_1.5_8k_base on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Evo_1_8k_base on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Evo_1_8k on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Evo2-7B-base on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- Evo2-7B on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- GENA-LM-large on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
spearman (correlation) · Higher values are better for this metric.
Every method NABench reports on Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ, scored with Random cross validation Spearman ρ on NABench SELEX assays.
- RNA-FM · Configuration · Author-reported evaluation0.685
- RNAernie · Configuration · Author-reported evaluation0.637
- SPACE · Configuration · Author-reported evaluation0.608
- AIDO.RNA · Configuration · Author-reported evaluation0.687
- BiRNA-BERT · Configuration · Author-reported evaluation0.681
- Crafts · Configuration · Author-reported evaluation0.654
- Dnabert · Configuration · Author-reported evaluation0.669
- Dnabert_6 · Configuration · Author-reported evaluation0.606
- Enformer · Configuration · Author-reported evaluation0.574
- Evo2-7B · Configuration · Author-reported evaluation0.597
- Evo2-7B-base · Configuration · Author-reported evaluation0.596
- Evo_1.5_8k_base · Configuration · Author-reported evaluation0.635
- Evo_1_8k · Configuration · Author-reported evaluation0.738
- Evo_1_8k_base · Configuration · Author-reported evaluation0.691
- GENA-LM-large · Configuration · Author-reported evaluation0.627
- GENERator-3B · Configuration · Author-reported evaluation0.657
- GenerRNA · Configuration · Author-reported evaluation0.642
- GenSLM · Configuration · Author-reported evaluation0.631
- HyenaDNA · Configuration · Author-reported evaluation0.656
- LucaOne · Configuration · Author-reported evaluation0.695
- LucaVirus · Configuration · Author-reported evaluation0.693
- N.T.-v2-500m · Configuration · Author-reported evaluation0.626
- N.T.-v2-50m · Configuration · Author-reported evaluation0.66
- RESM · Configuration · Author-reported evaluation0.681
- RiNALMo_giga · Configuration · Author-reported evaluation0.665
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, column(Random cross validation Spearman ρ)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| RNA-FM · Configuration | 0.685 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNA-FM), column(Random cross validation Spearman ρ) |
| RNAernie · Configuration | 0.637 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNAernie), column(Random cross validation Spearman ρ) |
| SPACE · Configuration | 0.608 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(SPACE), column(Random cross validation Spearman ρ) |
| AIDO.RNA · Configuration | 0.687 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Random cross validation Spearman ρ) |
| BiRNA-BERT · Configuration | 0.681 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Random cross validation Spearman ρ) |
| Crafts · Configuration | 0.654 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Random cross validation Spearman ρ) |
| Dnabert · Configuration | 0.669 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert), column(Random cross validation Spearman ρ) |
| Dnabert_6 · Configuration | 0.606 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Random cross validation Spearman ρ) |
| Enformer · Configuration | 0.574 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Enformer), column(Random cross validation Spearman ρ) |
| Evo2-7B · Configuration | 0.597 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B), column(Random cross validation Spearman ρ) |
| Evo2-7B-base · Configuration | 0.596 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B-base), column(Random cross validation Spearman ρ) |
| Evo_1.5_8k_base · Configuration | 0.635 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1.5_8k_base), column(Random cross validation Spearman ρ) |
| Evo_1_8k · Configuration | 0.738 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k), column(Random cross validation Spearman ρ) |
| Evo_1_8k_base · Configuration | 0.691 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k_base), column(Random cross validation Spearman ρ) |
| GENA-LM-large · Configuration | 0.627 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENA-LM-large), column(Random cross validation Spearman ρ) |
| GENERator-3B · Configuration | 0.657 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENERator-3B), column(Random cross validation Spearman ρ) |
| GenerRNA · Configuration | 0.642 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenerRNA), column(Random cross validation Spearman ρ) |
| GenSLM · Configuration | 0.631 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenSLM), column(Random cross validation Spearman ρ) |
| HyenaDNA · Configuration | 0.656 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(HyenaDNA), column(Random cross validation Spearman ρ) |
| LucaOne · Configuration | 0.695 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaOne), column(Random cross validation Spearman ρ) |
| LucaVirus · Configuration | 0.693 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaVirus), column(Random cross validation Spearman ρ) |
| N.T.-v2-500m · Configuration | 0.626 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Random cross validation Spearman ρ) |
| N.T.-v2-50m · Configuration | 0.66 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-50m), column(Random cross validation Spearman ρ) |
| RESM · Configuration | 0.681 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RESM), column(Random cross validation Spearman ρ) |
| RiNALMo_giga · Configuration | 0.665 correlation | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RiNALMo_giga), column(Random cross validation Spearman ρ) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
- The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 25 evaluations · 25 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AIDO.RNA on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: AIDO.RNATask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.687 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| BiRNA-BERT on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: BiRNA-BERTTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.681 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Crafts on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: CraftsTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.654 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Dnabert_6 on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: Dnabert_6Task: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.606 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Dnabert on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: DnabertTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.669 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Enformer on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: EnformerTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.574 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Enformer), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Evo_1.5_8k_base on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: Evo_1.5_8k_baseTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.635 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1.5_8k_base), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Evo_1_8k_base on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: Evo_1_8k_baseTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.691 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k_base), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Evo_1_8k on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: Evo_1_8kTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.738 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Evo2-7B-base on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: Evo2-7B-baseTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.596 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B-base), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| Evo2-7B on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: Evo2-7BTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.597 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| GENA-LM-large on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: GENA-LM-largeTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.627 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENA-LM-large), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| GENERator-3B on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: GENERator-3BTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.657 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENERator-3B), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| GenerRNA on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: GenerRNATask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.642 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenerRNA), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| GenSLM on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: GenSLMTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.631 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenSLM), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| HyenaDNA on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: HyenaDNATask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.656 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(HyenaDNA), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| LucaOne on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: LucaOneTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.695 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaOne), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| LucaVirus on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: LucaVirusTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.693 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaVirus), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: N.T.-v2-500mTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.626 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| N.T.-v2-50m on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: N.T.-v2-50mTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.66 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-50m), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| RESM on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: RESMTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.681 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RESM), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| RiNALMo_giga on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: RiNALMo_gigaTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.665 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RiNALMo_giga), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| RNA-FM on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: RNA-FMTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.685 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNA-FM), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| RNAernie on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: RNAernieTask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.637 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNAernie), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
| SPACE on NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ Configuration: SPACETask: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.608 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(SPACE), column(Random cross validation Spearman ρ) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-nabench Individual claims | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 12, column(Random cross validation Spearman ρ) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: nabench-association-selex-rcv Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-task-selex-rcv
- areas
- rna-transcriptomes
- tasks
- Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ
- metric
- Random cross validation Spearman ρ
- metric direction
- higher
- dataset
- NABench SELEX assays
- protocol
- Aggregated by the NABench authors across NABench SELEX assays.
- source locator
- Table 12, column(Random cross validation Spearman ρ)
- comparison panels
- id: nabench-panel-selex-rcv; title: NABench SELEX-RCV: Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ; protocol id: nabench-task-selex-rcv; dataset id: nabench-dataset-nabench-selex-assays; metric: spearman; unit: correlation; direction: higher; result ids: nabench-result-rna-fm-selex-rcv-spearman; nabench-result-rnaernie-selex-rcv-spearman; nabench-result-space-selex-rcv-spearman; nabench-result-aido-rna-selex-rcv-spearman; nabench-result-birna-bert-selex-rcv-spearman; nabench-result-crafts-selex-rcv-spearman; nabench-result-dnabert-selex-rcv-spearman; nabench-result-dnabert-6-selex-rcv-spearman; nabench-result-enformer-selex-rcv-spearman; nabench-result-evo2-7b-selex-rcv-spearman; nabench-result-evo2-7b-base-selex-rcv-spearman; nabench-result-evo-1-5-8k-base-selex-rcv-spearman; nabench-result-evo-1-8k-selex-rcv-spearman; nabench-result-evo-1-8k-base-selex-rcv-spearman; nabench-result-gena-lm-large-selex-rcv-spearman; nabench-result-generator-3b-selex-rcv-spearman; nabench-result-generrna-selex-rcv-spearman; nabench-result-genslm-selex-rcv-spearman; nabench-result-hyenadna-selex-rcv-spearman; nabench-result-lucaone-selex-rcv-spearman; nabench-result-lucavirus-selex-rcv-spearman; nabench-result-n-t-v2-500m-selex-rcv-spearman; nabench-result-n-t-v2-50m-selex-rcv-spearman; nabench-result-resm-selex-rcv-spearman; nabench-result-rinalmo-giga-selex-rcv-spearman; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 12, column(Random cross validation Spearman ρ); context: Every method NABench reports on Overall fitness prediction on NABench SELEX assays, Random cross validation Spearman ρ, scored with Random cross validation Spearman ρ on NABench SELEX assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18
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