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Task

NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot

Fitness prediction on promoter assays, few-shot. Scored with Spearman ρ on NABench promoter assays. Scored few-shot across the NABench promoter assays.

26 evaluations · 26 metric rows

Overview

Fitness prediction on promoter assays, few-shot. Scored with Spearman ρ on NABench promoter assays. Scored few-shot across the NABench promoter assays.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluation design

Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.

Benchmarks

These source-backed links do not make different protocols or scores interchangeable.

Recorded evaluations

Each evaluation records what was tested and under which conditions.

Explore all linked results

Run instructions

No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.

Published comparisons

Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.

NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot

spearman (correlation) · Higher values are better for this metric.

Every method NABench reports on Fitness prediction on promoter assays, few-shot, scored with Spearman ρ on NABench promoter assays.

Evaluation protocol · NABench promoter assays (NABench split)

  1. RNA-FM · Configuration · Author-reported evaluation0.159
  2. LucaOne · Configuration · Author-reported evaluation0.127
  3. RESM · Configuration · Author-reported evaluation0.138
  4. Enformer · Configuration · Author-reported evaluation0.184
  5. GENERator-3B · Configuration · Author-reported evaluation0.143
  6. structRFM · Configuration · Author-reported evaluation0.104
  7. SPACE · Configuration · Author-reported evaluation0.114
  8. N.T.-v2-50m · Configuration · Author-reported evaluation0.061
  9. Evo_1.5_8k_base · Configuration · Author-reported evaluation0.052
  10. Evo2-7B · Configuration · Author-reported evaluation0.067
  11. Crafts · Configuration · Author-reported evaluation0.075
  12. Evo_1_8k_base · Configuration · Author-reported evaluation0.052
  13. Evo_1_8k · Configuration · Author-reported evaluation0.052
  14. BiRNA-BERT · Configuration · Author-reported evaluation0.181
  15. RNAernie · Configuration · Author-reported evaluation0.110
  16. Evo2-7B-base · Configuration · Author-reported evaluation0.064
  17. GENA-LM-large · Configuration · Author-reported evaluation0.110
  18. HyenaDNA · Configuration · Author-reported evaluation0.079
  19. RiNALMo_giga · Configuration · Author-reported evaluation0.174
  20. GenerRNA · Configuration · Author-reported evaluation0.111
  21. Dnabert · Configuration · Author-reported evaluation0.108
  22. AIDO.RNA · Configuration · Author-reported evaluation0.126
  23. LucaVirus · Configuration · Author-reported evaluation0.131
  24. N.T.-v2-500m · Configuration · Author-reported evaluation0.071
  25. GenSLM · Configuration · Author-reported evaluation0.115
  26. Dnabert_6 · Configuration · Author-reported evaluation0.112

Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.

NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, column(promoter)
Values, uncertainty and evidence
spearman: original source values
Tested entityPrinted valueUncertaintyEvidence
RNA-FM · Configuration0.159 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(RNA-FM), column(promoter)
LucaOne · Configuration0.127 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaOne), column(promoter)
RESM · Configuration0.138 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(RESM), column(promoter)
Enformer · Configuration0.184 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Enformer), column(promoter)
GENERator-3B · Configuration0.143 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(GENERator-3B), column(promoter)
structRFM · Configuration0.104 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(structRFM), column(promoter)
SPACE · Configuration0.114 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(SPACE), column(promoter)
N.T.-v2-50m · Configuration0.061 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-50m), column(promoter)
Evo_1.5_8k_base · Configuration0.052 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo_1.5_8k_base), column(promoter)
Evo2-7B · Configuration0.067 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo2-7B), column(promoter)
Crafts · Configuration0.075 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Crafts), column(promoter)
Evo_1_8k_base · Configuration0.052 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo_1_8k_base), column(promoter)
Evo_1_8k · Configuration0.052 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo_1_8k), column(promoter)
BiRNA-BERT · Configuration0.181 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(BiRNA-BERT), column(promoter)
RNAernie · Configuration0.110 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(RNAernie), column(promoter)
Evo2-7B-base · Configuration0.064 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo2-7B-base), column(promoter)
GENA-LM-large · Configuration0.110 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(GENA-LM-large), column(promoter)
HyenaDNA · Configuration0.079 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(HyenaDNA), column(promoter)
RiNALMo_giga · Configuration0.174 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(RiNALMo_giga), column(promoter)
GenerRNA · Configuration0.111 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(GenerRNA), column(promoter)
Dnabert · Configuration0.108 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert), column(promoter)
AIDO.RNA · Configuration0.126 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(AIDO.RNA), column(promoter)
LucaVirus · Configuration0.131 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaVirus), column(promoter)
N.T.-v2-500m · Configuration0.071 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-500m), column(promoter)
GenSLM · Configuration0.115 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(GenSLM), column(promoter)
Dnabert_6 · Configuration0.112 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(promoter)
Scope and limitations
  • Author-reported numbers, source checked but not independently reproduced.
  • Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
  • The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.

Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.

Tested entities and results

Release 2026-09-17-134cd1815de8 · 26 evaluations · 26 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
AIDO.RNA on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: AIDO.RNATask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.126 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(AIDO.RNA), column(promoter)

Source checking is not independent reproduction.

BiRNA-BERT on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: BiRNA-BERTTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.181 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(BiRNA-BERT), column(promoter)

Source checking is not independent reproduction.

Crafts on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: CraftsTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.075 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Crafts), column(promoter)

Source checking is not independent reproduction.

Dnabert_6 on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: Dnabert_6Task: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.112 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(promoter)

Source checking is not independent reproduction.

Dnabert on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: DnabertTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.108 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert), column(promoter)

Source checking is not independent reproduction.

Enformer on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: EnformerTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.184 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Enformer), column(promoter)

Source checking is not independent reproduction.

Evo_1.5_8k_base on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: Evo_1.5_8k_baseTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.052 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo_1.5_8k_base), column(promoter)

Source checking is not independent reproduction.

Evo_1_8k_base on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: Evo_1_8k_baseTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.052 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo_1_8k_base), column(promoter)

Source checking is not independent reproduction.

Evo_1_8k on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: Evo_1_8kTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.052 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo_1_8k), column(promoter)

Source checking is not independent reproduction.

Evo2-7B-base on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: Evo2-7B-baseTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.064 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo2-7B-base), column(promoter)

Source checking is not independent reproduction.

Evo2-7B on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: Evo2-7BTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.067 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Evo2-7B), column(promoter)

Source checking is not independent reproduction.

GENA-LM-large on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: GENA-LM-largeTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.110 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(GENA-LM-large), column(promoter)

Source checking is not independent reproduction.

GENERator-3B on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: GENERator-3BTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.143 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(GENERator-3B), column(promoter)

Source checking is not independent reproduction.

GenerRNA on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: GenerRNATask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.111 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(GenerRNA), column(promoter)

Source checking is not independent reproduction.

GenSLM on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: GenSLMTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.115 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(GenSLM), column(promoter)

Source checking is not independent reproduction.

HyenaDNA on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: HyenaDNATask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.079 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(HyenaDNA), column(promoter)

Source checking is not independent reproduction.

LucaOne on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: LucaOneTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.127 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaOne), column(promoter)

Source checking is not independent reproduction.

LucaVirus on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: LucaVirusTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.131 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(LucaVirus), column(promoter)

Source checking is not independent reproduction.

N.T.-v2-500m on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: N.T.-v2-500mTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.071 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-500m), column(promoter)

Source checking is not independent reproduction.

N.T.-v2-50m on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: N.T.-v2-50mTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.061 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(N.T.-v2-50m), column(promoter)

Source checking is not independent reproduction.

RESM on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: RESMTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.138 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(RESM), column(promoter)

Source checking is not independent reproduction.

RiNALMo_giga on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: RiNALMo_gigaTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.174 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(RiNALMo_giga), column(promoter)

Source checking is not independent reproduction.

RNA-FM on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: RNA-FMTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.159 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(RNA-FM), column(promoter)

Source checking is not independent reproduction.

RNAernie on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: RNAernieTask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.110 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(RNAernie), column(promoter)

Source checking is not independent reproduction.

SPACE on NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot
Configuration: SPACETask: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shotDataset subset: NABench promoter assays (NABench split)

Scored few-shot across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.114 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(SPACE), column(promoter)

Source checking is not independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-134cd1815de8
Property and statementOriginal source and locationReview and provenance
Relationship: part of

discovery-benchmark-nabench

Individual claims		NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 9, column(promoter)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

source checked

automated source review · 2026-09-18

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-nabench

Claim: nabench-association-fs-corr-promoter

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

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Sources and history

Release 2026-09-17-134cd1815de8 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: nabench-task-fs-corr-promoter

areas
rna-transcriptomes
tasks
Fitness prediction on promoter assays, few-shot
metric
Spearman ρ
metric direction
higher
dataset
NABench promoter assays
protocol
Scored few-shot across the NABench promoter assays.
source locator
Table 9, column(promoter)
comparison panels
id: nabench-panel-fs-corr-promoter; title: NABench FS-CORR-PROMOTER: Fitness prediction on promoter assays, few-shot; protocol id: nabench-task-fs-corr-promoter; dataset id: nabench-dataset-nabench-promoter-assays; metric: spearman; unit: correlation; direction: higher; result ids: nabench-result-rna-fm-fs-corr-promoter-spearman; nabench-result-lucaone-fs-corr-promoter-spearman; nabench-result-resm-fs-corr-promoter-spearman; nabench-result-enformer-fs-corr-promoter-spearman; nabench-result-generator-3b-fs-corr-promoter-spearman; nabench-result-structrfm-fs-corr-promoter-spearman; nabench-result-space-fs-corr-promoter-spearman; nabench-result-n-t-v2-50m-fs-corr-promoter-spearman; nabench-result-evo-1-5-8k-base-fs-corr-promoter-spearman; nabench-result-evo2-7b-fs-corr-promoter-spearman; nabench-result-crafts-fs-corr-promoter-spearman; nabench-result-evo-1-8k-base-fs-corr-promoter-spearman; nabench-result-evo-1-8k-fs-corr-promoter-spearman; nabench-result-birna-bert-fs-corr-promoter-spearman; nabench-result-rnaernie-fs-corr-promoter-spearman; nabench-result-evo2-7b-base-fs-corr-promoter-spearman; nabench-result-gena-lm-large-fs-corr-promoter-spearman; nabench-result-hyenadna-fs-corr-promoter-spearman; nabench-result-rinalmo-giga-fs-corr-promoter-spearman; nabench-result-generrna-fs-corr-promoter-spearman; nabench-result-dnabert-fs-corr-promoter-spearman; nabench-result-aido-rna-fs-corr-promoter-spearman; nabench-result-lucavirus-fs-corr-promoter-spearman; nabench-result-n-t-v2-500m-fs-corr-promoter-spearman; nabench-result-genslm-fs-corr-promoter-spearman; nabench-result-dnabert-6-fs-corr-promoter-spearman; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 9, column(promoter); context: Every method NABench reports on Fitness prediction on promoter assays, few-shot, scored with Spearman ρ on NABench promoter assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18
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