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Task

NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation

Fitness prediction on promoter assays, supervised, random cross validation. Scored with Spearman ρ on NABench promoter assays. Scored supervised, random cross validation across the NABench promoter assays.

26 evaluations · 26 metric rows

Overview

Fitness prediction on promoter assays, supervised, random cross validation. Scored with Spearman ρ on NABench promoter assays. Scored supervised, random cross validation across the NABench promoter assays.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluation design

Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.

Benchmarks

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Recorded evaluations

Each evaluation records what was tested and under which conditions.

Explore all linked results

Run instructions

No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

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Published comparisons

Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.

NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation

spearman (correlation) · Higher values are better for this metric.

Every method NABench reports on Fitness prediction on promoter assays, supervised, random cross validation, scored with Spearman ρ on NABench promoter assays.

Evaluation protocol · NABench promoter assays (NABench split)

  1. RNA-FM · Configuration · Author-reported evaluation0.582
  2. LucaOne · Configuration · Author-reported evaluation0.623
  3. RESM · Configuration · Author-reported evaluation0.610
  4. Enformer · Configuration · Author-reported evaluation0.554
  5. GENERator-3B · Configuration · Author-reported evaluation0.555
  6. structRFM · Configuration · Author-reported evaluation0.610
  7. SPACE · Configuration · Author-reported evaluation0.612
  8. N.T.-v2-50m · Configuration · Author-reported evaluation0.632
  9. Evo_1.5_8k_base · Configuration · Author-reported evaluation0.443
  10. Evo2-7B · Configuration · Author-reported evaluation0.249
  11. Crafts · Configuration · Author-reported evaluation0.516
  12. Evo_1_8k_base · Configuration · Author-reported evaluation0.444
  13. Evo_1_8k · Configuration · Author-reported evaluation0.444
  14. BiRNA-BERT · Configuration · Author-reported evaluation0.579
  15. RNAernie · Configuration · Author-reported evaluation0.348
  16. Evo2-7B-base · Configuration · Author-reported evaluation0.293
  17. GENA-LM-large · Configuration · Author-reported evaluation0.604
  18. HyenaDNA · Configuration · Author-reported evaluation0.576
  19. RiNALMo_giga · Configuration · Author-reported evaluation0.681
  20. GenerRNA · Configuration · Author-reported evaluation0.559
  21. Dnabert · Configuration · Author-reported evaluation0.579
  22. AIDO.RNA · Configuration · Author-reported evaluation0.481
  23. LucaVirus · Configuration · Author-reported evaluation0.588
  24. N.T.-v2-500m · Configuration · Author-reported evaluation0.636
  25. GenSLM · Configuration · Author-reported evaluation0.515
  26. Dnabert_6 · Configuration · Author-reported evaluation0.409

Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.

NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, column(promoter)
Values, uncertainty and evidence
spearman: original source values
Tested entityPrinted valueUncertaintyEvidence
RNA-FM · Configuration0.582 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNA-FM), column(promoter)
LucaOne · Configuration0.623 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaOne), column(promoter)
RESM · Configuration0.610 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RESM), column(promoter)
Enformer · Configuration0.554 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Enformer), column(promoter)
GENERator-3B · Configuration0.555 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENERator-3B), column(promoter)
structRFM · Configuration0.610 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(structRFM), column(promoter)
SPACE · Configuration0.612 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(SPACE), column(promoter)
N.T.-v2-50m · Configuration0.632 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-50m), column(promoter)
Evo_1.5_8k_base · Configuration0.443 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1.5_8k_base), column(promoter)
Evo2-7B · Configuration0.249 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B), column(promoter)
Crafts · Configuration0.516 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Crafts), column(promoter)
Evo_1_8k_base · Configuration0.444 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k_base), column(promoter)
Evo_1_8k · Configuration0.444 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k), column(promoter)
BiRNA-BERT · Configuration0.579 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(BiRNA-BERT), column(promoter)
RNAernie · Configuration0.348 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNAernie), column(promoter)
Evo2-7B-base · Configuration0.293 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B-base), column(promoter)
GENA-LM-large · Configuration0.604 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENA-LM-large), column(promoter)
HyenaDNA · Configuration0.576 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(HyenaDNA), column(promoter)
RiNALMo_giga · Configuration0.681 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RiNALMo_giga), column(promoter)
GenerRNA · Configuration0.559 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenerRNA), column(promoter)
Dnabert · Configuration0.579 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert), column(promoter)
AIDO.RNA · Configuration0.481 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(AIDO.RNA), column(promoter)
LucaVirus · Configuration0.588 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(promoter)
N.T.-v2-500m · Configuration0.636 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(promoter)
GenSLM · Configuration0.515 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenSLM), column(promoter)
Dnabert_6 · Configuration0.409 correlationNot reportedAuthor-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(promoter)
Scope and limitations
  • Author-reported numbers, source checked but not independently reproduced.
  • Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
  • The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.

Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.

Tested entities and results

Release 2026-09-17-134cd1815de8 · 26 evaluations · 26 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
AIDO.RNA on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: AIDO.RNATask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.481 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(AIDO.RNA), column(promoter)

Source checking is not independent reproduction.

BiRNA-BERT on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: BiRNA-BERTTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.579 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(BiRNA-BERT), column(promoter)

Source checking is not independent reproduction.

Crafts on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: CraftsTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.516 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Crafts), column(promoter)

Source checking is not independent reproduction.

Dnabert_6 on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: Dnabert_6Task: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.409 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(promoter)

Source checking is not independent reproduction.

Dnabert on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: DnabertTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.579 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert), column(promoter)

Source checking is not independent reproduction.

Enformer on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: EnformerTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.554 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Enformer), column(promoter)

Source checking is not independent reproduction.

Evo_1.5_8k_base on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: Evo_1.5_8k_baseTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.443 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1.5_8k_base), column(promoter)

Source checking is not independent reproduction.

Evo_1_8k_base on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: Evo_1_8k_baseTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.444 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k_base), column(promoter)

Source checking is not independent reproduction.

Evo_1_8k on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: Evo_1_8kTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.444 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k), column(promoter)

Source checking is not independent reproduction.

Evo2-7B-base on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: Evo2-7B-baseTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.293 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B-base), column(promoter)

Source checking is not independent reproduction.

Evo2-7B on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: Evo2-7BTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.249 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B), column(promoter)

Source checking is not independent reproduction.

GENA-LM-large on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: GENA-LM-largeTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.604 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENA-LM-large), column(promoter)

Source checking is not independent reproduction.

GENERator-3B on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: GENERator-3BTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.555 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENERator-3B), column(promoter)

Source checking is not independent reproduction.

GenerRNA on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: GenerRNATask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.559 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenerRNA), column(promoter)

Source checking is not independent reproduction.

GenSLM on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: GenSLMTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.515 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenSLM), column(promoter)

Source checking is not independent reproduction.

HyenaDNA on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: HyenaDNATask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.576 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(HyenaDNA), column(promoter)

Source checking is not independent reproduction.

LucaOne on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: LucaOneTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.623 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaOne), column(promoter)

Source checking is not independent reproduction.

LucaVirus on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: LucaVirusTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.588 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(promoter)

Source checking is not independent reproduction.

N.T.-v2-500m on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: N.T.-v2-500mTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.636 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(promoter)

Source checking is not independent reproduction.

N.T.-v2-50m on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: N.T.-v2-50mTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.632 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-50m), column(promoter)

Source checking is not independent reproduction.

RESM on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: RESMTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.610 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RESM), column(promoter)

Source checking is not independent reproduction.

RiNALMo_giga on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: RiNALMo_gigaTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.681 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RiNALMo_giga), column(promoter)

Source checking is not independent reproduction.

RNA-FM on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: RNA-FMTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.582 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNA-FM), column(promoter)

Source checking is not independent reproduction.

RNAernie on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: RNAernieTask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.348 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNAernie), column(promoter)

Source checking is not independent reproduction.

SPACE on NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation
Configuration: SPACETask: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validationDataset subset: NABench promoter assays (NABench split)

Scored supervised, random cross validation across the NABench promoter assays.

Author-reported evaluation · Evaluation metadata: source checked

0.612 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(SPACE), column(promoter)

Source checking is not independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-134cd1815de8
Property and statementOriginal source and locationReview and provenance
Relationship: part of

discovery-benchmark-nabench

Individual claims		NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

Table 10, column(promoter)

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

source checked

automated source review · 2026-09-18

Audit details

Primary-source transcription with no human sign-off and no independent reproduction.

Field: links:part_of:discovery-benchmark-nabench

Claim: nabench-association-rcv-corr-promoter

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

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Release 2026-09-17-134cd1815de8 · Record review: source checked

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Technical metadata and extraction receipts

Stable ID: nabench-task-rcv-corr-promoter

areas
rna-transcriptomes
tasks
Fitness prediction on promoter assays, supervised, random cross validation
metric
Spearman ρ
metric direction
higher
dataset
NABench promoter assays
protocol
Scored supervised, random cross validation across the NABench promoter assays.
source locator
Table 10, column(promoter)
comparison panels
id: nabench-panel-rcv-corr-promoter; title: NABench RCV-CORR-PROMOTER: Fitness prediction on promoter assays, supervised, random cross validation; protocol id: nabench-task-rcv-corr-promoter; dataset id: nabench-dataset-nabench-promoter-assays; metric: spearman; unit: correlation; direction: higher; result ids: nabench-result-rna-fm-rcv-corr-promoter-spearman; nabench-result-lucaone-rcv-corr-promoter-spearman; nabench-result-resm-rcv-corr-promoter-spearman; nabench-result-enformer-rcv-corr-promoter-spearman; nabench-result-generator-3b-rcv-corr-promoter-spearman; nabench-result-structrfm-rcv-corr-promoter-spearman; nabench-result-space-rcv-corr-promoter-spearman; nabench-result-n-t-v2-50m-rcv-corr-promoter-spearman; nabench-result-evo-1-5-8k-base-rcv-corr-promoter-spearman; nabench-result-evo2-7b-rcv-corr-promoter-spearman; nabench-result-crafts-rcv-corr-promoter-spearman; nabench-result-evo-1-8k-base-rcv-corr-promoter-spearman; nabench-result-evo-1-8k-rcv-corr-promoter-spearman; nabench-result-birna-bert-rcv-corr-promoter-spearman; nabench-result-rnaernie-rcv-corr-promoter-spearman; nabench-result-evo2-7b-base-rcv-corr-promoter-spearman; nabench-result-gena-lm-large-rcv-corr-promoter-spearman; nabench-result-hyenadna-rcv-corr-promoter-spearman; nabench-result-rinalmo-giga-rcv-corr-promoter-spearman; nabench-result-generrna-rcv-corr-promoter-spearman; nabench-result-dnabert-rcv-corr-promoter-spearman; nabench-result-aido-rna-rcv-corr-promoter-spearman; nabench-result-lucavirus-rcv-corr-promoter-spearman; nabench-result-n-t-v2-500m-rcv-corr-promoter-spearman; nabench-result-genslm-rcv-corr-promoter-spearman; nabench-result-dnabert-6-rcv-corr-promoter-spearman; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 10, column(promoter); context: Every method NABench reports on Fitness prediction on promoter assays, supervised, random cross validation, scored with Spearman ρ on NABench promoter assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18
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