NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
Fitness prediction on ribozyme assays, supervised, random cross validation. Scored with Spearman ρ on NABench ribozyme assays. Scored supervised, random cross validation across the NABench ribozyme assays.
Overview
Fitness prediction on ribozyme assays, supervised, random cross validation. Scored with Spearman ρ on NABench ribozyme assays. Scored supervised, random cross validation across the NABench ribozyme assays.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AIDO.RNA on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- BiRNA-BERT on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Crafts on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Dnabert_6 on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Dnabert on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Enformer on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Evo_1.5_8k_base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Evo_1_8k_base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Evo_1_8k on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Evo2-7B-base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- Evo2-7B on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- GENA-LM-large on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
spearman (correlation) · Higher values are better for this metric.
Every method NABench reports on Fitness prediction on ribozyme assays, supervised, random cross validation, scored with Spearman ρ on NABench ribozyme assays.
Evaluation protocol · NABench ribozyme assays (NABench split)
- RNA-FM · Configuration · Author-reported evaluation0.556
- LucaOne · Configuration · Author-reported evaluation0.558
- RESM · Configuration · Author-reported evaluation0.587
- Enformer · Configuration · Author-reported evaluation0.352
- GENERator-3B · Configuration · Author-reported evaluation0.449
- structRFM · Configuration · Author-reported evaluation0.531
- SPACE · Configuration · Author-reported evaluation0.467
- N.T.-v2-50m · Configuration · Author-reported evaluation0.464
- Evo_1.5_8k_base · Configuration · Author-reported evaluation0.412
- Evo2-7B · Configuration · Author-reported evaluation0.202
- Crafts · Configuration · Author-reported evaluation0.541
- Evo_1_8k_base · Configuration · Author-reported evaluation0.409
- Evo_1_8k · Configuration · Author-reported evaluation0.409
- BiRNA-BERT · Configuration · Author-reported evaluation0.488
- RNAernie · Configuration · Author-reported evaluation0.394
- Evo2-7B-base · Configuration · Author-reported evaluation0.212
- GENA-LM-large · Configuration · Author-reported evaluation0.475
- HyenaDNA · Configuration · Author-reported evaluation0.556
- RiNALMo_giga · Configuration · Author-reported evaluation0.512
- GenerRNA · Configuration · Author-reported evaluation0.548
- Dnabert · Configuration · Author-reported evaluation0.460
- AIDO.RNA · Configuration · Author-reported evaluation0.495
- LucaVirus · Configuration · Author-reported evaluation0.529
- N.T.-v2-500m · Configuration · Author-reported evaluation0.429
- GenSLM · Configuration · Author-reported evaluation0.452
- Dnabert_6 · Configuration · Author-reported evaluation0.302
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, column(ribozyme)Values, uncertainty and evidence
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
- The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 26 evaluations · 26 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AIDO.RNA on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: AIDO.RNATask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.495 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(AIDO.RNA), column(ribozyme) Source checking is not independent reproduction. |
| BiRNA-BERT on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: BiRNA-BERTTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.488 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(BiRNA-BERT), column(ribozyme) Source checking is not independent reproduction. |
| Crafts on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: CraftsTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.541 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Crafts), column(ribozyme) Source checking is not independent reproduction. |
| Dnabert_6 on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: Dnabert_6Task: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.302 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(ribozyme) Source checking is not independent reproduction. |
| Dnabert on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: DnabertTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.460 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert), column(ribozyme) Source checking is not independent reproduction. |
| Enformer on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: EnformerTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.352 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Enformer), column(ribozyme) Source checking is not independent reproduction. |
| Evo_1.5_8k_base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: Evo_1.5_8k_baseTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.412 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1.5_8k_base), column(ribozyme) Source checking is not independent reproduction. |
| Evo_1_8k_base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: Evo_1_8k_baseTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.409 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k_base), column(ribozyme) Source checking is not independent reproduction. |
| Evo_1_8k on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: Evo_1_8kTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.409 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k), column(ribozyme) Source checking is not independent reproduction. |
| Evo2-7B-base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: Evo2-7B-baseTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.212 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B-base), column(ribozyme) Source checking is not independent reproduction. |
| Evo2-7B on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: Evo2-7BTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.202 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B), column(ribozyme) Source checking is not independent reproduction. |
| GENA-LM-large on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: GENA-LM-largeTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.475 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENA-LM-large), column(ribozyme) Source checking is not independent reproduction. |
| GENERator-3B on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: GENERator-3BTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.449 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENERator-3B), column(ribozyme) Source checking is not independent reproduction. |
| GenerRNA on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: GenerRNATask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.548 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenerRNA), column(ribozyme) Source checking is not independent reproduction. |
| GenSLM on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: GenSLMTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.452 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenSLM), column(ribozyme) Source checking is not independent reproduction. |
| HyenaDNA on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: HyenaDNATask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.556 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(HyenaDNA), column(ribozyme) Source checking is not independent reproduction. |
| LucaOne on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: LucaOneTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.558 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaOne), column(ribozyme) Source checking is not independent reproduction. |
| LucaVirus on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: LucaVirusTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.529 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(ribozyme) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: N.T.-v2-500mTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.429 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(ribozyme) Source checking is not independent reproduction. |
| N.T.-v2-50m on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: N.T.-v2-50mTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.464 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-50m), column(ribozyme) Source checking is not independent reproduction. |
| RESM on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: RESMTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.587 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RESM), column(ribozyme) Source checking is not independent reproduction. |
| RiNALMo_giga on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: RiNALMo_gigaTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.512 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RiNALMo_giga), column(ribozyme) Source checking is not independent reproduction. |
| RNA-FM on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: RNA-FMTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.556 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNA-FM), column(ribozyme) Source checking is not independent reproduction. |
| RNAernie on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: RNAernieTask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.394 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNAernie), column(ribozyme) Source checking is not independent reproduction. |
| SPACE on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation Configuration: SPACETask: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validationDataset subset: NABench ribozyme assays (NABench split) Scored supervised, random cross validation across the NABench ribozyme assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.467 spearman Unit: correlation · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(SPACE), column(ribozyme) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-nabench Individual claims | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 10, column(ribozyme) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: nabench-association-rcv-corr-ribozyme Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-task-rcv-corr-ribozyme
- areas
- rna-transcriptomes
- tasks
- Fitness prediction on ribozyme assays, supervised, random cross validation
- metric
- Spearman ρ
- metric direction
- higher
- dataset
- NABench ribozyme assays
- protocol
- Scored supervised, random cross validation across the NABench ribozyme assays.
- source locator
- Table 10, column(ribozyme)
- comparison panels
- id: nabench-panel-rcv-corr-ribozyme; title: NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation; protocol id: nabench-task-rcv-corr-ribozyme; dataset id: nabench-dataset-nabench-ribozyme-assays; metric: spearman; unit: correlation; direction: higher; result ids: nabench-result-rna-fm-rcv-corr-ribozyme-spearman; nabench-result-lucaone-rcv-corr-ribozyme-spearman; nabench-result-resm-rcv-corr-ribozyme-spearman; nabench-result-enformer-rcv-corr-ribozyme-spearman; nabench-result-generator-3b-rcv-corr-ribozyme-spearman; nabench-result-structrfm-rcv-corr-ribozyme-spearman; nabench-result-space-rcv-corr-ribozyme-spearman; nabench-result-n-t-v2-50m-rcv-corr-ribozyme-spearman; nabench-result-evo-1-5-8k-base-rcv-corr-ribozyme-spearman; nabench-result-evo2-7b-rcv-corr-ribozyme-spearman; nabench-result-crafts-rcv-corr-ribozyme-spearman; nabench-result-evo-1-8k-base-rcv-corr-ribozyme-spearman; nabench-result-evo-1-8k-rcv-corr-ribozyme-spearman; nabench-result-birna-bert-rcv-corr-ribozyme-spearman; nabench-result-rnaernie-rcv-corr-ribozyme-spearman; nabench-result-evo2-7b-base-rcv-corr-ribozyme-spearman; nabench-result-gena-lm-large-rcv-corr-ribozyme-spearman; nabench-result-hyenadna-rcv-corr-ribozyme-spearman; nabench-result-rinalmo-giga-rcv-corr-ribozyme-spearman; nabench-result-generrna-rcv-corr-ribozyme-spearman; nabench-result-dnabert-rcv-corr-ribozyme-spearman; nabench-result-aido-rna-rcv-corr-ribozyme-spearman; nabench-result-lucavirus-rcv-corr-ribozyme-spearman; nabench-result-n-t-v2-500m-rcv-corr-ribozyme-spearman; nabench-result-genslm-rcv-corr-ribozyme-spearman; nabench-result-dnabert-6-rcv-corr-ribozyme-spearman; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 10, column(ribozyme); context: Every method NABench reports on Fitness prediction on ribozyme assays, supervised, random cross validation, scored with Spearman ρ on NABench ribozyme assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: NABench
- subject: NABench RCV-CORR-RIBOZYME: part of discovery-benchmark-nabench
- benchmark: AIDO.RNA on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: BiRNA-BERT on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Crafts on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Dnabert_6 on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Dnabert on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Enformer on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Evo_1.5_8k_base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Evo_1_8k_base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Evo_1_8k on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Evo2-7B-base on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: Evo2-7B on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: GENA-LM-large on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: GENERator-3B on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: GenerRNA on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: GenSLM on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: HyenaDNA on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: LucaOne on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: LucaVirus on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: N.T.-v2-500m on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: N.T.-v2-50m on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: RESM on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: RiNALMo_giga on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: RNA-FM on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: RNAernie on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: SPACE on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation
- benchmark: structRFM on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation