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Dataset subset

NABench ribozyme assays (NABench split)

The split of NABench ribozyme assays that NABench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.

Subset and evaluation context

This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.

Evaluation results

Release 2026-09-17-134cd1815de8 · 130 evaluations · 130 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Results grouped by the exact reported evaluation
Metric and findingCoverage and uncertaintyEvidence
AIDO.RNA on NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.219 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(AIDO.RNA), column(ribozyme)

Source checking is not independent reproduction.

AIDO.RNA on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot

Scored few-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.201 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(AIDO.RNA), column(ribozyme)

Source checking is not independent reproduction.

AIDO.RNA on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.495 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(AIDO.RNA), column(ribozyme)

Source checking is not independent reproduction.

AIDO.RNA on NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.554 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(AIDO.RNA), column(ribozyme)

Source checking is not independent reproduction.

AIDO.RNA on NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.109 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(AIDO.RNA), column(ribozyme)

Source checking is not independent reproduction.

BiRNA-BERT on NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.193 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(BiRNA-BERT), column(ribozyme)

Source checking is not independent reproduction.

BiRNA-BERT on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot

Scored few-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.175 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(BiRNA-BERT), column(ribozyme)

Source checking is not independent reproduction.

BiRNA-BERT on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.488 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(BiRNA-BERT), column(ribozyme)

Source checking is not independent reproduction.

BiRNA-BERT on NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.556 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(BiRNA-BERT), column(ribozyme)

Source checking is not independent reproduction.

BiRNA-BERT on NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.102 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(BiRNA-BERT), column(ribozyme)

Source checking is not independent reproduction.

Crafts on NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.245 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Crafts), column(ribozyme)

Source checking is not independent reproduction.

Crafts on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot

Scored few-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.129 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Crafts), column(ribozyme)

Source checking is not independent reproduction.

Crafts on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.541 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Crafts), column(ribozyme)

Source checking is not independent reproduction.

Crafts on NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.570 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Crafts), column(ribozyme)

Source checking is not independent reproduction.

Crafts on NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.132 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Crafts), column(ribozyme)

Source checking is not independent reproduction.

Dnabert_6 on NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.220 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert_6), column(ribozyme)

Source checking is not independent reproduction.

Dnabert_6 on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot

Scored few-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.088 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert_6), column(ribozyme)

Source checking is not independent reproduction.

Dnabert_6 on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.302 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(ribozyme)

Source checking is not independent reproduction.

Dnabert_6 on NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.535 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Dnabert_6), column(ribozyme)

Source checking is not independent reproduction.

Dnabert_6 on NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.061 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Dnabert_6), column(ribozyme)

Source checking is not independent reproduction.

Dnabert on NABench CCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, contiguous cross validation

Scored supervised, contiguous cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.213 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 11, row(Dnabert), column(ribozyme)

Source checking is not independent reproduction.

Dnabert on NABench FS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, few-shot

Scored few-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.150 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 9, row(Dnabert), column(ribozyme)

Source checking is not independent reproduction.

Dnabert on NABench RCV-CORR-RIBOZYME: Fitness prediction on ribozyme assays, supervised, random cross validation

Scored supervised, random cross validation across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.460 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert), column(ribozyme)

Source checking is not independent reproduction.

Dnabert on NABench ZS-AUC-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.525 auc

Unit: fraction · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Dnabert), column(ribozyme)

Source checking is not independent reproduction.

Dnabert on NABench ZS-CORR-RIBOZYME: Fitness prediction on ribozyme assays, zero-shot

Scored zero-shot across the NABench ribozyme assays.

Author-reported evaluation · Evaluation metadata: source checked

0.049 spearman

Unit: correlation · Direction: higher

Uncertainty: Not reported

Scored: Not reported · Eligible: Not reported

source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 7, row(Dnabert), column(ribozyme)

Source checking is not independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

2 evidence rows matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-134cd1815de8
Property and statementOriginal source and locationReview and provenance
description

The split of NABench ribozyme assays that NABench evaluated on. The upstream dataset release is not catalogued here, so no claim is made that this matches its original splits.

Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

No field-specific location recorded

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: description

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

name

NABench ribozyme assays (NABench split)

Context-only references
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction

Original source ↗

No field-specific location recorded

Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Retrieved: 2026-09-17T08:06:28.183421+00:00

not individually reviewed

No individual claim review recorded

Audit details

Field: name

Source artifact SHA-256: fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350

Hash scope: Exact retrieved primary paper artifact bytes.

Inspected artifact

Sources and history

Release 2026-09-17-134cd1815de8 · Record review: source checked

1 source records and release historyDownload this release
Technical metadata and extraction receipts

Stable ID: nabench-dataset-nabench-ribozyme-assays

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rna-transcriptomes
missing metadata
version: unreported; url: unextracted
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