NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
Fitness prediction on aptamer assays, zero-shot. Scored with AUC on NABench aptamer assays. Scored zero-shot across the NABench aptamer assays.
Overview
Fitness prediction on aptamer assays, zero-shot. Scored with AUC on NABench aptamer assays. Scored zero-shot across the NABench aptamer assays.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AIDO.RNA on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- BiRNA-BERT on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Crafts on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Dnabert_6 on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Dnabert on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Enformer on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Evo_1.5_8k_base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Evo_1_8k_base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Evo_1_8k on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Evo2-7B-base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- Evo2-7B on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- GENA-LM-large on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
auc (fraction) · Higher values are better for this metric.
Every method NABench reports on Fitness prediction on aptamer assays, zero-shot, scored with AUC on NABench aptamer assays.
Evaluation protocol · NABench aptamer assays (NABench split)
- RNA-FM · Configuration · Author-reported evaluation0.578
- LucaOne · Configuration · Author-reported evaluation0.549
- RESM · Configuration · Author-reported evaluation0.569
- Enformer · Configuration · Author-reported evaluation0.599
- GENERator-3B · Configuration · Author-reported evaluation0.567
- structRFM · Configuration · Author-reported evaluation0.595
- SPACE · Configuration · Author-reported evaluation0.571
- N.T.-v2-50m · Configuration · Author-reported evaluation0.560
- Evo_1.5_8k_base · Configuration · Author-reported evaluation0.578
- Evo2-7B · Configuration · Author-reported evaluation0.541
- Crafts · Configuration · Author-reported evaluation0.621
- Evo_1_8k_base · Configuration · Author-reported evaluation0.588
- Evo_1_8k · Configuration · Author-reported evaluation0.588
- BiRNA-BERT · Configuration · Author-reported evaluation0.559
- RNAernie · Configuration · Author-reported evaluation0.558
- Evo2-7B-base · Configuration · Author-reported evaluation0.545
- GENA-LM-large · Configuration · Author-reported evaluation0.570
- HyenaDNA · Configuration · Author-reported evaluation0.514
- RiNALMo_giga · Configuration · Author-reported evaluation0.556
- GenerRNA · Configuration · Author-reported evaluation0.603
- Dnabert · Configuration · Author-reported evaluation0.589
- AIDO.RNA · Configuration · Author-reported evaluation0.578
- LucaVirus · Configuration · Author-reported evaluation0.563
- N.T.-v2-500m · Configuration · Author-reported evaluation0.524
- GenSLM · Configuration · Author-reported evaluation0.583
- Dnabert_6 · Configuration · Author-reported evaluation0.559
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, column(aptamer)Values, uncertainty and evidence
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
- The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 26 evaluations · 26 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AIDO.RNA on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: AIDO.RNATask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.578 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(AIDO.RNA), column(aptamer) Source checking is not independent reproduction. |
| BiRNA-BERT on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: BiRNA-BERTTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.559 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(BiRNA-BERT), column(aptamer) Source checking is not independent reproduction. |
| Crafts on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: CraftsTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.621 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Crafts), column(aptamer) Source checking is not independent reproduction. |
| Dnabert_6 on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Dnabert_6Task: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.559 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Dnabert_6), column(aptamer) Source checking is not independent reproduction. |
| Dnabert on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: DnabertTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.589 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Dnabert), column(aptamer) Source checking is not independent reproduction. |
| Enformer on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: EnformerTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.599 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Enformer), column(aptamer) Source checking is not independent reproduction. |
| Evo_1.5_8k_base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo_1.5_8k_baseTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.578 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Evo_1.5_8k_base), column(aptamer) Source checking is not independent reproduction. |
| Evo_1_8k_base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo_1_8k_baseTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.588 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Evo_1_8k_base), column(aptamer) Source checking is not independent reproduction. |
| Evo_1_8k on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo_1_8kTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.588 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Evo_1_8k), column(aptamer) Source checking is not independent reproduction. |
| Evo2-7B-base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo2-7B-baseTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.545 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Evo2-7B-base), column(aptamer) Source checking is not independent reproduction. |
| Evo2-7B on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: Evo2-7BTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.541 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(Evo2-7B), column(aptamer) Source checking is not independent reproduction. |
| GENA-LM-large on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: GENA-LM-largeTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.570 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(GENA-LM-large), column(aptamer) Source checking is not independent reproduction. |
| GENERator-3B on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: GENERator-3BTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.567 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(GENERator-3B), column(aptamer) Source checking is not independent reproduction. |
| GenerRNA on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: GenerRNATask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.603 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(GenerRNA), column(aptamer) Source checking is not independent reproduction. |
| GenSLM on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: GenSLMTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.583 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(GenSLM), column(aptamer) Source checking is not independent reproduction. |
| HyenaDNA on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: HyenaDNATask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.514 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(HyenaDNA), column(aptamer) Source checking is not independent reproduction. |
| LucaOne on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: LucaOneTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.549 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(LucaOne), column(aptamer) Source checking is not independent reproduction. |
| LucaVirus on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: LucaVirusTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.563 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(LucaVirus), column(aptamer) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: N.T.-v2-500mTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.524 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(N.T.-v2-500m), column(aptamer) Source checking is not independent reproduction. |
| N.T.-v2-50m on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: N.T.-v2-50mTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.560 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(N.T.-v2-50m), column(aptamer) Source checking is not independent reproduction. |
| RESM on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: RESMTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.569 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(RESM), column(aptamer) Source checking is not independent reproduction. |
| RiNALMo_giga on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: RiNALMo_gigaTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.556 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(RiNALMo_giga), column(aptamer) Source checking is not independent reproduction. |
| RNA-FM on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: RNA-FMTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.578 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(RNA-FM), column(aptamer) Source checking is not independent reproduction. |
| RNAernie on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: RNAernieTask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.558 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(RNAernie), column(aptamer) Source checking is not independent reproduction. |
| SPACE on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot Configuration: SPACETask: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shotDataset subset: NABench aptamer assays (NABench split) Scored zero-shot across the NABench aptamer assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.571 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 8, row(SPACE), column(aptamer) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-nabench Individual claims | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 8, column(aptamer) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: nabench-association-zs-auc-aptamer Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-task-zs-auc-aptamer
- areas
- rna-transcriptomes
- tasks
- Fitness prediction on aptamer assays, zero-shot
- metric
- AUC
- metric direction
- higher
- dataset
- NABench aptamer assays
- protocol
- Scored zero-shot across the NABench aptamer assays.
- source locator
- Table 8, column(aptamer)
- comparison panels
- id: nabench-panel-zs-auc-aptamer; title: NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot; protocol id: nabench-task-zs-auc-aptamer; dataset id: nabench-dataset-nabench-aptamer-assays; metric: auc; unit: fraction; direction: higher; result ids: nabench-result-rna-fm-zs-auc-aptamer-auc; nabench-result-lucaone-zs-auc-aptamer-auc; nabench-result-resm-zs-auc-aptamer-auc; nabench-result-enformer-zs-auc-aptamer-auc; nabench-result-generator-3b-zs-auc-aptamer-auc; nabench-result-structrfm-zs-auc-aptamer-auc; nabench-result-space-zs-auc-aptamer-auc; nabench-result-n-t-v2-50m-zs-auc-aptamer-auc; nabench-result-evo-1-5-8k-base-zs-auc-aptamer-auc; nabench-result-evo2-7b-zs-auc-aptamer-auc; nabench-result-crafts-zs-auc-aptamer-auc; nabench-result-evo-1-8k-base-zs-auc-aptamer-auc; nabench-result-evo-1-8k-zs-auc-aptamer-auc; nabench-result-birna-bert-zs-auc-aptamer-auc; nabench-result-rnaernie-zs-auc-aptamer-auc; nabench-result-evo2-7b-base-zs-auc-aptamer-auc; nabench-result-gena-lm-large-zs-auc-aptamer-auc; nabench-result-hyenadna-zs-auc-aptamer-auc; nabench-result-rinalmo-giga-zs-auc-aptamer-auc; nabench-result-generrna-zs-auc-aptamer-auc; nabench-result-dnabert-zs-auc-aptamer-auc; nabench-result-aido-rna-zs-auc-aptamer-auc; nabench-result-lucavirus-zs-auc-aptamer-auc; nabench-result-n-t-v2-500m-zs-auc-aptamer-auc; nabench-result-genslm-zs-auc-aptamer-auc; nabench-result-dnabert-6-zs-auc-aptamer-auc; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 8, column(aptamer); context: Every method NABench reports on Fitness prediction on aptamer assays, zero-shot, scored with AUC on NABench aptamer assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: NABench
- subject: NABench ZS-AUC-APTAMER: part of discovery-benchmark-nabench
- benchmark: AIDO.RNA on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: BiRNA-BERT on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Crafts on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Dnabert_6 on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Dnabert on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Enformer on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Evo_1.5_8k_base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Evo_1_8k_base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Evo_1_8k on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Evo2-7B-base on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: Evo2-7B on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: GENA-LM-large on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: GENERator-3B on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: GenerRNA on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: GenSLM on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: HyenaDNA on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: LucaOne on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: LucaVirus on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: N.T.-v2-500m on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: N.T.-v2-50m on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: RESM on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: RiNALMo_giga on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: RNA-FM on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: RNAernie on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: SPACE on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot
- benchmark: structRFM on NABench ZS-AUC-APTAMER: Fitness prediction on aptamer assays, zero-shot