NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
Overall fitness prediction on NABench SELEX assays, Zero-shot AUC. Scored with Zero-shot AUC on NABench SELEX assays. Aggregated by the NABench authors across NABench SELEX assays.
Overview
Overall fitness prediction on NABench SELEX assays, Zero-shot AUC. Scored with Zero-shot AUC on NABench SELEX assays. Aggregated by the NABench authors across NABench SELEX assays.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AIDO.RNA on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- BiRNA-BERT on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Crafts on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Dnabert_6 on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Dnabert on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Enformer on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Evo_1.5_8k_base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Evo_1_8k_base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Evo_1_8k on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Evo2-7B-base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- Evo2-7B on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- GENA-LM-large on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
auc (fraction) · Higher values are better for this metric.
Every method NABench reports on Overall fitness prediction on NABench SELEX assays, Zero-shot AUC, scored with Zero-shot AUC on NABench SELEX assays.
- RNA-FM · Configuration · Author-reported evaluation0.55
- RNAernie · Configuration · Author-reported evaluation0.553
- SPACE · Configuration · Author-reported evaluation0.557
- AIDO.RNA · Configuration · Author-reported evaluation0.547
- BiRNA-BERT · Configuration · Author-reported evaluation0.546
- Crafts · Configuration · Author-reported evaluation0.56
- Dnabert · Configuration · Author-reported evaluation0.534
- Dnabert_6 · Configuration · Author-reported evaluation0.533
- Enformer · Configuration · Author-reported evaluation0.557
- Evo2-7B · Configuration · Author-reported evaluation0.556
- Evo2-7B-base · Configuration · Author-reported evaluation0.555
- Evo_1.5_8k_base · Configuration · Author-reported evaluation0.572
- Evo_1_8k · Configuration · Author-reported evaluation0.574
- Evo_1_8k_base · Configuration · Author-reported evaluation0.57
- GENA-LM-large · Configuration · Author-reported evaluation0.552
- GENERator-3B · Configuration · Author-reported evaluation0.551
- GenerRNA · Configuration · Author-reported evaluation0.533
- GenSLM · Configuration · Author-reported evaluation0.544
- HyenaDNA · Configuration · Author-reported evaluation0.543
- LucaOne · Configuration · Author-reported evaluation0.546
- LucaVirus · Configuration · Author-reported evaluation0.541
- N.T.-v2-500m · Configuration · Author-reported evaluation0.526
- N.T.-v2-50m · Configuration · Author-reported evaluation0.554
- RESM · Configuration · Author-reported evaluation0.555
- RiNALMo_giga · Configuration · Author-reported evaluation0.539
- structRFM · Configuration · Author-reported evaluation0.552
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, column(Zero-shot AUC)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| RNA-FM · Configuration | 0.55 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNA-FM), column(Zero-shot AUC) |
| RNAernie · Configuration | 0.553 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNAernie), column(Zero-shot AUC) |
| SPACE · Configuration | 0.557 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(SPACE), column(Zero-shot AUC) |
| AIDO.RNA · Configuration | 0.547 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Zero-shot AUC) |
| BiRNA-BERT · Configuration | 0.546 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Zero-shot AUC) |
| Crafts · Configuration | 0.56 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Zero-shot AUC) |
| Dnabert · Configuration | 0.534 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert), column(Zero-shot AUC) |
| Dnabert_6 · Configuration | 0.533 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot AUC) |
| Enformer · Configuration | 0.557 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Enformer), column(Zero-shot AUC) |
| Evo2-7B · Configuration | 0.556 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B), column(Zero-shot AUC) |
| Evo2-7B-base · Configuration | 0.555 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B-base), column(Zero-shot AUC) |
| Evo_1.5_8k_base · Configuration | 0.572 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1.5_8k_base), column(Zero-shot AUC) |
| Evo_1_8k · Configuration | 0.574 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k), column(Zero-shot AUC) |
| Evo_1_8k_base · Configuration | 0.57 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k_base), column(Zero-shot AUC) |
| GENA-LM-large · Configuration | 0.552 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENA-LM-large), column(Zero-shot AUC) |
| GENERator-3B · Configuration | 0.551 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENERator-3B), column(Zero-shot AUC) |
| GenerRNA · Configuration | 0.533 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenerRNA), column(Zero-shot AUC) |
| GenSLM · Configuration | 0.544 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenSLM), column(Zero-shot AUC) |
| HyenaDNA · Configuration | 0.543 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(HyenaDNA), column(Zero-shot AUC) |
| LucaOne · Configuration | 0.546 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaOne), column(Zero-shot AUC) |
| LucaVirus · Configuration | 0.541 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaVirus), column(Zero-shot AUC) |
| N.T.-v2-500m · Configuration | 0.526 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Zero-shot AUC) |
| N.T.-v2-50m · Configuration | 0.554 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-50m), column(Zero-shot AUC) |
| RESM · Configuration | 0.555 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RESM), column(Zero-shot AUC) |
| RiNALMo_giga · Configuration | 0.539 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RiNALMo_giga), column(Zero-shot AUC) |
| structRFM · Configuration | 0.552 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(structRFM), column(Zero-shot AUC) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
- The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 26 evaluations · 26 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AIDO.RNA on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: AIDO.RNATask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.547 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Zero-shot AUC) Source checking is not independent reproduction. |
| BiRNA-BERT on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: BiRNA-BERTTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.546 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Crafts on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: CraftsTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.56 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Dnabert_6 on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: Dnabert_6Task: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.533 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Dnabert on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: DnabertTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.534 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Enformer on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: EnformerTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.557 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Enformer), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Evo_1.5_8k_base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: Evo_1.5_8k_baseTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.572 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1.5_8k_base), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Evo_1_8k_base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: Evo_1_8k_baseTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.57 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k_base), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Evo_1_8k on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: Evo_1_8kTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.574 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Evo2-7B-base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: Evo2-7B-baseTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.555 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B-base), column(Zero-shot AUC) Source checking is not independent reproduction. |
| Evo2-7B on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: Evo2-7BTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.556 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B), column(Zero-shot AUC) Source checking is not independent reproduction. |
| GENA-LM-large on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: GENA-LM-largeTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.552 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENA-LM-large), column(Zero-shot AUC) Source checking is not independent reproduction. |
| GENERator-3B on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: GENERator-3BTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.551 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENERator-3B), column(Zero-shot AUC) Source checking is not independent reproduction. |
| GenerRNA on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: GenerRNATask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.533 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenerRNA), column(Zero-shot AUC) Source checking is not independent reproduction. |
| GenSLM on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: GenSLMTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.544 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenSLM), column(Zero-shot AUC) Source checking is not independent reproduction. |
| HyenaDNA on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: HyenaDNATask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.543 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(HyenaDNA), column(Zero-shot AUC) Source checking is not independent reproduction. |
| LucaOne on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: LucaOneTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.546 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaOne), column(Zero-shot AUC) Source checking is not independent reproduction. |
| LucaVirus on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: LucaVirusTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.541 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaVirus), column(Zero-shot AUC) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: N.T.-v2-500mTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.526 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Zero-shot AUC) Source checking is not independent reproduction. |
| N.T.-v2-50m on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: N.T.-v2-50mTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.554 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-50m), column(Zero-shot AUC) Source checking is not independent reproduction. |
| RESM on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: RESMTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.555 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RESM), column(Zero-shot AUC) Source checking is not independent reproduction. |
| RiNALMo_giga on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: RiNALMo_gigaTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.539 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RiNALMo_giga), column(Zero-shot AUC) Source checking is not independent reproduction. |
| RNA-FM on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: RNA-FMTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.55 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNA-FM), column(Zero-shot AUC) Source checking is not independent reproduction. |
| RNAernie on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: RNAernieTask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.553 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNAernie), column(Zero-shot AUC) Source checking is not independent reproduction. |
| SPACE on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC Configuration: SPACETask: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUCDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.557 auc Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(SPACE), column(Zero-shot AUC) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-nabench Individual claims | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 12, column(Zero-shot AUC) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: nabench-association-selex-zs-auc Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-task-selex-zs-auc
- areas
- rna-transcriptomes
- tasks
- Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- metric
- Zero-shot AUC
- metric direction
- higher
- dataset
- NABench SELEX assays
- protocol
- Aggregated by the NABench authors across NABench SELEX assays.
- source locator
- Table 12, column(Zero-shot AUC)
- comparison panels
- id: nabench-panel-selex-zs-auc; title: NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC; protocol id: nabench-task-selex-zs-auc; dataset id: nabench-dataset-nabench-selex-assays; metric: auc; unit: fraction; direction: higher; result ids: nabench-result-rna-fm-selex-zs-auc-auc; nabench-result-rnaernie-selex-zs-auc-auc; nabench-result-space-selex-zs-auc-auc; nabench-result-aido-rna-selex-zs-auc-auc; nabench-result-birna-bert-selex-zs-auc-auc; nabench-result-crafts-selex-zs-auc-auc; nabench-result-dnabert-selex-zs-auc-auc; nabench-result-dnabert-6-selex-zs-auc-auc; nabench-result-enformer-selex-zs-auc-auc; nabench-result-evo2-7b-selex-zs-auc-auc; nabench-result-evo2-7b-base-selex-zs-auc-auc; nabench-result-evo-1-5-8k-base-selex-zs-auc-auc; nabench-result-evo-1-8k-selex-zs-auc-auc; nabench-result-evo-1-8k-base-selex-zs-auc-auc; nabench-result-gena-lm-large-selex-zs-auc-auc; nabench-result-generator-3b-selex-zs-auc-auc; nabench-result-generrna-selex-zs-auc-auc; nabench-result-genslm-selex-zs-auc-auc; nabench-result-hyenadna-selex-zs-auc-auc; nabench-result-lucaone-selex-zs-auc-auc; nabench-result-lucavirus-selex-zs-auc-auc; nabench-result-n-t-v2-500m-selex-zs-auc-auc; nabench-result-n-t-v2-50m-selex-zs-auc-auc; nabench-result-resm-selex-zs-auc-auc; nabench-result-rinalmo-giga-selex-zs-auc-auc; nabench-result-structrfm-selex-zs-auc-auc; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 12, column(Zero-shot AUC); context: Every method NABench reports on Overall fitness prediction on NABench SELEX assays, Zero-shot AUC, scored with Zero-shot AUC on NABench SELEX assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: NABench
- subject: NABench SELEX-ZS-AUC: part of discovery-benchmark-nabench
- benchmark: AIDO.RNA on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: BiRNA-BERT on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Crafts on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Dnabert_6 on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Dnabert on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Enformer on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Evo_1.5_8k_base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Evo_1_8k_base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Evo_1_8k on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Evo2-7B-base on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: Evo2-7B on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: GENA-LM-large on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: GENERator-3B on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: GenerRNA on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: GenSLM on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: HyenaDNA on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: LucaOne on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: LucaVirus on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: N.T.-v2-500m on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: N.T.-v2-50m on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: RESM on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: RiNALMo_giga on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: RNA-FM on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: RNAernie on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: SPACE on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC
- benchmark: structRFM on NABench SELEX-ZS-AUC: Overall fitness prediction on NABench SELEX assays, Zero-shot AUC