NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG. Scored with Zero-shot NDCG on NABench SELEX assays. Aggregated by the NABench authors across NABench SELEX assays.
Overview
Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG. Scored with Zero-shot NDCG on NABench SELEX assays. Aggregated by the NABench authors across NABench SELEX assays.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AIDO.RNA on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- BiRNA-BERT on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Crafts on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Dnabert_6 on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Dnabert on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Enformer on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Evo_1.5_8k_base on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Evo_1_8k_base on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Evo_1_8k on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Evo2-7B-base on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- Evo2-7B on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- GENA-LM-large on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
ndcg (fraction) · Higher values are better for this metric.
Every method NABench reports on Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG, scored with Zero-shot NDCG on NABench SELEX assays.
- RNA-FM · Configuration · Author-reported evaluation0.194
- RNAernie · Configuration · Author-reported evaluation0.201
- SPACE · Configuration · Author-reported evaluation0.396
- AIDO.RNA · Configuration · Author-reported evaluation0.266
- BiRNA-BERT · Configuration · Author-reported evaluation0.3
- Crafts · Configuration · Author-reported evaluation0.283
- Dnabert · Configuration · Author-reported evaluation0.305
- Dnabert_6 · Configuration · Author-reported evaluation0.293
- Enformer · Configuration · Author-reported evaluation0.187
- Evo2-7B · Configuration · Author-reported evaluation0.321
- Evo2-7B-base · Configuration · Author-reported evaluation0.328
- Evo_1.5_8k_base · Configuration · Author-reported evaluation0.324
- Evo_1_8k · Configuration · Author-reported evaluation0.344
- Evo_1_8k_base · Configuration · Author-reported evaluation0.316
- GENA-LM-large · Configuration · Author-reported evaluation0.389
- GENERator-3B · Configuration · Author-reported evaluation0.203
- GenerRNA · Configuration · Author-reported evaluation0.182
- GenSLM · Configuration · Author-reported evaluation0.389
- HyenaDNA · Configuration · Author-reported evaluation0.279
- LucaOne · Configuration · Author-reported evaluation0.292
- LucaVirus · Configuration · Author-reported evaluation0.288
- N.T.-v2-500m · Configuration · Author-reported evaluation0.195
- N.T.-v2-50m · Configuration · Author-reported evaluation0.36
- RESM · Configuration · Author-reported evaluation0.213
- RiNALMo_giga · Configuration · Author-reported evaluation0.369
- structRFM · Configuration · Author-reported evaluation0.266
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, column(Zero-shot NDCG)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| RNA-FM · Configuration | 0.194 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNA-FM), column(Zero-shot NDCG) |
| RNAernie · Configuration | 0.201 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNAernie), column(Zero-shot NDCG) |
| SPACE · Configuration | 0.396 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(SPACE), column(Zero-shot NDCG) |
| AIDO.RNA · Configuration | 0.266 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Zero-shot NDCG) |
| BiRNA-BERT · Configuration | 0.3 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Zero-shot NDCG) |
| Crafts · Configuration | 0.283 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Zero-shot NDCG) |
| Dnabert · Configuration | 0.305 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert), column(Zero-shot NDCG) |
| Dnabert_6 · Configuration | 0.293 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot NDCG) |
| Enformer · Configuration | 0.187 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Enformer), column(Zero-shot NDCG) |
| Evo2-7B · Configuration | 0.321 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B), column(Zero-shot NDCG) |
| Evo2-7B-base · Configuration | 0.328 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B-base), column(Zero-shot NDCG) |
| Evo_1.5_8k_base · Configuration | 0.324 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1.5_8k_base), column(Zero-shot NDCG) |
| Evo_1_8k · Configuration | 0.344 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k), column(Zero-shot NDCG) |
| Evo_1_8k_base · Configuration | 0.316 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k_base), column(Zero-shot NDCG) |
| GENA-LM-large · Configuration | 0.389 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENA-LM-large), column(Zero-shot NDCG) |
| GENERator-3B · Configuration | 0.203 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENERator-3B), column(Zero-shot NDCG) |
| GenerRNA · Configuration | 0.182 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenerRNA), column(Zero-shot NDCG) |
| GenSLM · Configuration | 0.389 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenSLM), column(Zero-shot NDCG) |
| HyenaDNA · Configuration | 0.279 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(HyenaDNA), column(Zero-shot NDCG) |
| LucaOne · Configuration | 0.292 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaOne), column(Zero-shot NDCG) |
| LucaVirus · Configuration | 0.288 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaVirus), column(Zero-shot NDCG) |
| N.T.-v2-500m · Configuration | 0.195 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Zero-shot NDCG) |
| N.T.-v2-50m · Configuration | 0.36 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-50m), column(Zero-shot NDCG) |
| RESM · Configuration | 0.213 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RESM), column(Zero-shot NDCG) |
| RiNALMo_giga · Configuration | 0.369 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RiNALMo_giga), column(Zero-shot NDCG) |
| structRFM · Configuration | 0.266 fraction | Not reported | Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(structRFM), column(Zero-shot NDCG) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
- The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 26 evaluations · 26 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| AIDO.RNA on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: AIDO.RNATask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.266 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(AIDO.RNA), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| BiRNA-BERT on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: BiRNA-BERTTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.3 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(BiRNA-BERT), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Crafts on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: CraftsTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.283 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Crafts), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Dnabert_6 on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: Dnabert_6Task: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.293 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert_6), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Dnabert on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: DnabertTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.305 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Dnabert), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Enformer on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: EnformerTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.187 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Enformer), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Evo_1.5_8k_base on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: Evo_1.5_8k_baseTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.324 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1.5_8k_base), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Evo_1_8k_base on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: Evo_1_8k_baseTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.316 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k_base), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Evo_1_8k on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: Evo_1_8kTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.344 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo_1_8k), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Evo2-7B-base on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: Evo2-7B-baseTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.328 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B-base), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| Evo2-7B on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: Evo2-7BTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.321 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(Evo2-7B), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| GENA-LM-large on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: GENA-LM-largeTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.389 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENA-LM-large), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| GENERator-3B on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: GENERator-3BTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.203 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GENERator-3B), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| GenerRNA on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: GenerRNATask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.182 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenerRNA), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| GenSLM on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: GenSLMTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.389 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(GenSLM), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| HyenaDNA on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: HyenaDNATask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.279 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(HyenaDNA), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| LucaOne on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: LucaOneTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.292 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaOne), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| LucaVirus on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: LucaVirusTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.288 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(LucaVirus), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| N.T.-v2-500m on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: N.T.-v2-500mTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.195 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-500m), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| N.T.-v2-50m on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: N.T.-v2-50mTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.36 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(N.T.-v2-50m), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| RESM on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: RESMTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.213 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RESM), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| RiNALMo_giga on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: RiNALMo_gigaTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.369 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RiNALMo_giga), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| RNA-FM on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: RNA-FMTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.194 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNA-FM), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| RNAernie on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: RNAernieTask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.201 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(RNAernie), column(Zero-shot NDCG) Source checking is not independent reproduction. |
| SPACE on NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG Configuration: SPACETask: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCGDataset subset: NABench SELEX assays (NABench split) Aggregated by the NABench authors across NABench SELEX assays. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.396 ndcg Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 12, row(SPACE), column(Zero-shot NDCG) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-nabench Individual claims | NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Table 12, column(Zero-shot NDCG) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: nabench-association-selex-zs-ndcg Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: nabench-task-selex-zs-ndcg
- areas
- rna-transcriptomes
- tasks
- Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG
- metric
- Zero-shot NDCG
- metric direction
- higher
- dataset
- NABench SELEX assays
- protocol
- Aggregated by the NABench authors across NABench SELEX assays.
- source locator
- Table 12, column(Zero-shot NDCG)
- comparison panels
- id: nabench-panel-selex-zs-ndcg; title: NABench SELEX-ZS-NDCG: Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG; protocol id: nabench-task-selex-zs-ndcg; dataset id: nabench-dataset-nabench-selex-assays; metric: ndcg; unit: fraction; direction: higher; result ids: nabench-result-rna-fm-selex-zs-ndcg-ndcg; nabench-result-rnaernie-selex-zs-ndcg-ndcg; nabench-result-space-selex-zs-ndcg-ndcg; nabench-result-aido-rna-selex-zs-ndcg-ndcg; nabench-result-birna-bert-selex-zs-ndcg-ndcg; nabench-result-crafts-selex-zs-ndcg-ndcg; nabench-result-dnabert-selex-zs-ndcg-ndcg; nabench-result-dnabert-6-selex-zs-ndcg-ndcg; nabench-result-enformer-selex-zs-ndcg-ndcg; nabench-result-evo2-7b-selex-zs-ndcg-ndcg; nabench-result-evo2-7b-base-selex-zs-ndcg-ndcg; nabench-result-evo-1-5-8k-base-selex-zs-ndcg-ndcg; nabench-result-evo-1-8k-selex-zs-ndcg-ndcg; nabench-result-evo-1-8k-base-selex-zs-ndcg-ndcg; nabench-result-gena-lm-large-selex-zs-ndcg-ndcg; nabench-result-generator-3b-selex-zs-ndcg-ndcg; nabench-result-generrna-selex-zs-ndcg-ndcg; nabench-result-genslm-selex-zs-ndcg-ndcg; nabench-result-hyenadna-selex-zs-ndcg-ndcg; nabench-result-lucaone-selex-zs-ndcg-ndcg; nabench-result-lucavirus-selex-zs-ndcg-ndcg; nabench-result-n-t-v2-500m-selex-zs-ndcg-ndcg; nabench-result-n-t-v2-50m-selex-zs-ndcg-ndcg; nabench-result-resm-selex-zs-ndcg-ndcg; nabench-result-rinalmo-giga-selex-zs-ndcg-ndcg; nabench-result-structrfm-selex-zs-ndcg-ndcg; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 12, column(Zero-shot NDCG); context: Every method NABench reports on Overall fitness prediction on NABench SELEX assays, Zero-shot NDCG, scored with Zero-shot NDCG on NABench SELEX assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18
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