Task

NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation

Fitness prediction on mRNA assays, supervised, random cross validation. Scored with Spearman ρ on NABench mRNA assays. Scored supervised, random cross validation across the NABench mRNA assays.

26 evaluations · 26 metric rows

Overview

Fitness prediction on mRNA assays, supervised, random cross validation. Scored with Spearman ρ on NABench mRNA assays. Scored supervised, random cross validation across the NABench mRNA assays.

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluation design

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Benchmarks

NABench

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Recorded evaluations

Each evaluation records what was tested and under which conditions.

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Run instructions

No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

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Published comparisons

Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.

Comparison and metric

NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation

spearman (correlation) · Higher values are better for this metric.

Every method NABench reports on Fitness prediction on mRNA assays, supervised, random cross validation, scored with Spearman ρ on NABench mRNA assays.

Evaluation protocol · NABench mRNA assays (NABench split)

RNA-FM · Configuration · Author-reported evaluation0.597
LucaOne · Configuration · Author-reported evaluation0.670
RESM · Configuration · Author-reported evaluation0.679
Enformer · Configuration · Author-reported evaluation0.488
GENERator-3B · Configuration · Author-reported evaluation0.607
structRFM · Configuration · Author-reported evaluation0.596
SPACE · Configuration · Author-reported evaluation0.540
N.T.-v2-50m · Configuration · Author-reported evaluation0.570
Evo_1.5_8k_base · Configuration · Author-reported evaluation0.491
Evo2-7B · Configuration · Author-reported evaluation0.429
Crafts · Configuration · Author-reported evaluation0.575
Evo_1_8k_base · Configuration · Author-reported evaluation0.478
Evo_1_8k · Configuration · Author-reported evaluation0.478
BiRNA-BERT · Configuration · Author-reported evaluation0.620
RNAernie · Configuration · Author-reported evaluation0.461
Evo2-7B-base · Configuration · Author-reported evaluation0.413
GENA-LM-large · Configuration · Author-reported evaluation0.594
HyenaDNA · Configuration · Author-reported evaluation0.599
RiNALMo_giga · Configuration · Author-reported evaluation0.636
GenerRNA · Configuration · Author-reported evaluation0.640
Dnabert · Configuration · Author-reported evaluation0.630
AIDO.RNA · Configuration · Author-reported evaluation0.565
LucaVirus · Configuration · Author-reported evaluation0.651
N.T.-v2-500m · Configuration · Author-reported evaluation0.560
GenSLM · Configuration · Author-reported evaluation0.557
Dnabert_6 · Configuration · Author-reported evaluation0.481

Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.

NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, column(mRNA)

Values, uncertainty and evidence

spearman: original source values
Tested entity	Printed value	Uncertainty	Evidence
RNA-FM · Configuration	0.597 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNA-FM), column(mRNA)
LucaOne · Configuration	0.670 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaOne), column(mRNA)
RESM · Configuration	0.679 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RESM), column(mRNA)
Enformer · Configuration	0.488 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Enformer), column(mRNA)
GENERator-3B · Configuration	0.607 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENERator-3B), column(mRNA)
structRFM · Configuration	0.596 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(structRFM), column(mRNA)
SPACE · Configuration	0.540 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(SPACE), column(mRNA)
N.T.-v2-50m · Configuration	0.570 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-50m), column(mRNA)
Evo_1.5_8k_base · Configuration	0.491 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1.5_8k_base), column(mRNA)
Evo2-7B · Configuration	0.429 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B), column(mRNA)
Crafts · Configuration	0.575 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Crafts), column(mRNA)
Evo_1_8k_base · Configuration	0.478 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k_base), column(mRNA)
Evo_1_8k · Configuration	0.478 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k), column(mRNA)
BiRNA-BERT · Configuration	0.620 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(BiRNA-BERT), column(mRNA)
RNAernie · Configuration	0.461 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNAernie), column(mRNA)
Evo2-7B-base · Configuration	0.413 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B-base), column(mRNA)
GENA-LM-large · Configuration	0.594 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENA-LM-large), column(mRNA)
HyenaDNA · Configuration	0.599 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(HyenaDNA), column(mRNA)
RiNALMo_giga · Configuration	0.636 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RiNALMo_giga), column(mRNA)
GenerRNA · Configuration	0.640 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenerRNA), column(mRNA)
Dnabert · Configuration	0.630 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert), column(mRNA)
AIDO.RNA · Configuration	0.565 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(AIDO.RNA), column(mRNA)
LucaVirus · Configuration	0.651 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(mRNA)
N.T.-v2-500m · Configuration	0.560 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(mRNA)
GenSLM · Configuration	0.557 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenSLM), column(mRNA)
Dnabert_6 · Configuration	0.481 correlation	Not reported	Author-reported evaluation · source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(mRNA)

Scope and limitations

Author-reported numbers, source checked but not independently reproduced.
Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.
The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.

Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.

Tested entities and results

Release 2026-09-17-134cd1815de8 · 26 evaluations · 26 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
AIDO.RNA on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: AIDO.RNATask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.565 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(AIDO.RNA), column(mRNA) Source checking is not independent reproduction.
BiRNA-BERT on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: BiRNA-BERTTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.620 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(BiRNA-BERT), column(mRNA) Source checking is not independent reproduction.
Crafts on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: CraftsTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.575 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Crafts), column(mRNA) Source checking is not independent reproduction.
Dnabert_6 on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: Dnabert_6Task: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.481 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert_6), column(mRNA) Source checking is not independent reproduction.
Dnabert on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: DnabertTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.630 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Dnabert), column(mRNA) Source checking is not independent reproduction.
Enformer on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: EnformerTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.488 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Enformer), column(mRNA) Source checking is not independent reproduction.
Evo_1.5_8k_base on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: Evo_1.5_8k_baseTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.491 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1.5_8k_base), column(mRNA) Source checking is not independent reproduction.
Evo_1_8k_base on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: Evo_1_8k_baseTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.478 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k_base), column(mRNA) Source checking is not independent reproduction.
Evo_1_8k on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: Evo_1_8kTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.478 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo_1_8k), column(mRNA) Source checking is not independent reproduction.
Evo2-7B-base on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: Evo2-7B-baseTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.413 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B-base), column(mRNA) Source checking is not independent reproduction.
Evo2-7B on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: Evo2-7BTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.429 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(Evo2-7B), column(mRNA) Source checking is not independent reproduction.
GENA-LM-large on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: GENA-LM-largeTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.594 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENA-LM-large), column(mRNA) Source checking is not independent reproduction.
GENERator-3B on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: GENERator-3BTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.607 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GENERator-3B), column(mRNA) Source checking is not independent reproduction.
GenerRNA on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: GenerRNATask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.640 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenerRNA), column(mRNA) Source checking is not independent reproduction.
GenSLM on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: GenSLMTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.557 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(GenSLM), column(mRNA) Source checking is not independent reproduction.
HyenaDNA on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: HyenaDNATask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.599 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(HyenaDNA), column(mRNA) Source checking is not independent reproduction.
LucaOne on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: LucaOneTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.670 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaOne), column(mRNA) Source checking is not independent reproduction.
LucaVirus on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: LucaVirusTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.651 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(LucaVirus), column(mRNA) Source checking is not independent reproduction.
N.T.-v2-500m on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: N.T.-v2-500mTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.560 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-500m), column(mRNA) Source checking is not independent reproduction.
N.T.-v2-50m on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: N.T.-v2-50mTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.570 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(N.T.-v2-50m), column(mRNA) Source checking is not independent reproduction.
RESM on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: RESMTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.679 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RESM), column(mRNA) Source checking is not independent reproduction.
RiNALMo_giga on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: RiNALMo_gigaTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.636 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RiNALMo_giga), column(mRNA) Source checking is not independent reproduction.
RNA-FM on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: RNA-FMTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.597 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNA-FM), column(mRNA) Source checking is not independent reproduction.
RNAernie on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: RNAernieTask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.461 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(RNAernie), column(mRNA) Source checking is not independent reproduction.
SPACE on NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation Configuration: SPACETask: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validationDataset subset: NABench mRNA assays (NABench split) Scored supervised, random cross validation across the NABench mRNA assays. Author-reported evaluation · Evaluation metadata: source checked
0.540 spearman Unit: correlation · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedNABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Table 10, row(SPACE), column(mRNA) Source checking is not independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-134cd1815de8
Property and statement	Original source and location	Review and provenance
Relationship: part of discovery-benchmark-nabench Individual claims	NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction Original source ↗ Table 10, column(mRNA) Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 Retrieved: 2026-09-17T08:06:28.183421+00:00	source checked automated source review · 2026-09-18 Audit details Primary-source transcription with no human sign-off and no independent reproduction. Field: `links:part_of:discovery-benchmark-nabench` Claim: nabench-association-rcv-corr-mrna Source artifact SHA-256: `fefd48d53b1a7eadf9e14db96adacc8e646304c1b592562d9f136f4508941350` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-134cd1815de8 · Record review: source checked

1 source records and release history

NABench: Large-Scale Benchmarks of Nucleotide Foundation Models for Fitness Prediction · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256

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Technical metadata and extraction receipts

Stable ID: nabench-task-rcv-corr-mrna

areas: rna-transcriptomes
tasks: Fitness prediction on mRNA assays, supervised, random cross validation
metric: Spearman ρ
metric direction: higher
dataset: NABench mRNA assays
protocol: Scored supervised, random cross validation across the NABench mRNA assays.
source locator: Table 10, column(mRNA)
comparison panels: id: nabench-panel-rcv-corr-mrna; title: NABench RCV-CORR-MRNA: Fitness prediction on mRNA assays, supervised, random cross validation; protocol id: nabench-task-rcv-corr-mrna; dataset id: nabench-dataset-nabench-mrna-assays; metric: spearman; unit: correlation; direction: higher; result ids: nabench-result-rna-fm-rcv-corr-mrna-spearman; nabench-result-lucaone-rcv-corr-mrna-spearman; nabench-result-resm-rcv-corr-mrna-spearman; nabench-result-enformer-rcv-corr-mrna-spearman; nabench-result-generator-3b-rcv-corr-mrna-spearman; nabench-result-structrfm-rcv-corr-mrna-spearman; nabench-result-space-rcv-corr-mrna-spearman; nabench-result-n-t-v2-50m-rcv-corr-mrna-spearman; nabench-result-evo-1-5-8k-base-rcv-corr-mrna-spearman; nabench-result-evo2-7b-rcv-corr-mrna-spearman; nabench-result-crafts-rcv-corr-mrna-spearman; nabench-result-evo-1-8k-base-rcv-corr-mrna-spearman; nabench-result-evo-1-8k-rcv-corr-mrna-spearman; nabench-result-birna-bert-rcv-corr-mrna-spearman; nabench-result-rnaernie-rcv-corr-mrna-spearman; nabench-result-evo2-7b-base-rcv-corr-mrna-spearman; nabench-result-gena-lm-large-rcv-corr-mrna-spearman; nabench-result-hyenadna-rcv-corr-mrna-spearman; nabench-result-rinalmo-giga-rcv-corr-mrna-spearman; nabench-result-generrna-rcv-corr-mrna-spearman; nabench-result-dnabert-rcv-corr-mrna-spearman; nabench-result-aido-rna-rcv-corr-mrna-spearman; nabench-result-lucavirus-rcv-corr-mrna-spearman; nabench-result-n-t-v2-500m-rcv-corr-mrna-spearman; nabench-result-genslm-rcv-corr-mrna-spearman; nabench-result-dnabert-6-rcv-corr-mrna-spearman; source ids: evidence-expansion-nabench-fefd48d5; source locator: Table 10, column(mRNA); context: Every method NABench reports on Fitness prediction on mRNA assays, supervised, random cross validation, scored with Spearman ρ on NABench mRNA assays.; caveats: Author-reported numbers, source checked but not independently reproduced.; Zero-shot, few-shot and supervised cross validation figures come from different protocols and are not comparable to each other.; The per-nucleotide-type figures and the overall figures describe the same runs at different resolutions, so they must not be combined.; review: method: automated_source_review; date: 2026-09-18

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