DNABERT-2 (probed) on DART-Eval REI-ABS: Regulatory element identification, absolute accuracy
DART-Eval evaluation of DNABERT-2 (probed) on Regulatory element identification, absolute accuracy, scored with Absolute accuracy.
Methods and reproduction
DART-Eval evaluation of DNABERT-2 (probed) on Regulatory element identification, absolute accuracy, scored with Absolute accuracy.
- task
- DART-Eval REI-ABS: Regulatory element identification, absolute accuracy
- configuration
- DNABERT-2 (probed)
- dataset subset
- ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split)
- Split
- Not reported
- Adaptation
- Not reported
- Scoring implementation
- Absolute accuracy
No execution recipe has been verified for this exact configuration and evaluation. A benchmark's general instructions may use different inputs, splits or model settings.
Reproducing this published result requires matching its model configuration, data, split and scorer. Source checking or a successful smoke test does not establish score reproduction.
Evaluation procedure
Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name.
- Configuration
- DNABERT-2 (probed)
- Task
- DART-Eval REI-ABS: Regulatory element identification, absolute accuracy
- Dataset subset
- ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split)
- origin
- Author-reported evaluation
- configuration
- Not reported
- protocol id
- dart-eval-task-rei-abs
- metric implementation
- Absolute accuracy
Metadata review: source checked. Unreported conditions prevent automatic comparisons.
Evaluation results
Release 2026-09-17-134cd1815de8 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DNABERT-2 (probed) on DART-Eval REI-ABS: Regulatory element identification, absolute accuracy Configuration: DNABERT-2 (probed)Task: DART-Eval REI-ABS: Regulatory element identification, absolute accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.847 absolute_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(DNABERT-2), column(probed absolute_accuracy) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
10 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.comparison.metric_implementation Absolute accuracy Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.comparison.protocol_id dart-eval-task-rei-abs Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.origin author_reported Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.protocol Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| attributes.source_locator Table 3, row(DNABERT-2), column(probed absolute_accuracy) Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description DART-Eval evaluation of DNABERT-2 (probed) on Regulatory element identification, absolute accuracy, scored with Absolute accuracy. Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: benchmark dart-eval-task-rei-abs Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: dataset dart-eval-dataset-encode-ccres-against-dinucleotide-shuffled-backgrounds Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Relationship: model dart-eval-method-dnabert-2-probed Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name DNABERT-2 (probed) on DART-Eval REI-ABS: Regulatory element identification, absolute accuracy Context-only references | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, row(DNABERT-2), column(probed absolute_accuracy) Version: 2412.05430v1 | not individually reviewed No individual claim review recorded author reported Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-evaluation-dnabert-2-probed-rei-abs
- areas
- dna-genomes
- tasks
- Regulatory element identification, absolute accuracy
- origin
- author_reported
- protocol
- Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name.
- comparison
- protocol id: dart-eval-task-rei-abs; metric implementation: Absolute accuracy
- missing metadata
- checkpoint revision: unreported; seeds: unreported; budget: unreported; split manifest: unextracted
- source locator
- Table 3, row(DNABERT-2), column(probed absolute_accuracy)