Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
Shallow CNN
Shallow CNN as evaluated in the cited study. Shallow CNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column DomainAt a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
How it works
Evaluation in this paper
Shallow CNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings
GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column DomainEvaluations and results
Release 2026-09-17-d277315f7d76 · 12 evaluations · 12 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Shallow CNN: SugarBase taxonomy · Domain Configuration: Shallow CNNProtocol: SugarBase taxonomy · Domain (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Domain Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 93.76(0.66)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.66; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Domain Source checking is not independent reproduction. |
| Shallow CNN: SugarBase taxonomy · Kingdom Configuration: Shallow CNNProtocol: SugarBase taxonomy · Kingdom (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Kingdom Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 91.66(2.29)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 2.29; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Kingdom Source checking is not independent reproduction. |
| Shallow CNN: SugarBase taxonomy · Family Configuration: Shallow CNNProtocol: SugarBase taxonomy · Family (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Family Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 45.27(1.52)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.52; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Family Source checking is not independent reproduction. |
| Shallow CNN: LectinOracle interaction · Interaction Configuration: Shallow CNNProtocol: LectinOracle interaction · Interaction (GlycanML protein-glycan interaction prediction)Dataset: LectinOracle interaction · Interaction Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.261(0.008) Spearman rho Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.008; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Interaction Source checking is not independent reproduction. |
| Shallow CNN: SugarBase taxonomy · Class Configuration: Shallow CNNProtocol: SugarBase taxonomy · Class (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Class Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 70.62(0.76)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.76; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Class Source checking is not independent reproduction. |
| Shallow CNN: SugarBase taxonomy · Mean Acc Configuration: Shallow CNNProtocol: SugarBase taxonomy · Mean Acc (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Mean Acc Fixed backbone; compare adaptation strategies, not standalone foundation models. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 63.47(0.42)% mean accuracy across eight taxonomy tasks Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.42; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 4, Shallow CNN, Single-Task, column Mean Acc (%) Source checking is not independent reproduction. |
| Shallow CNN: SugarBase taxonomy · Phylum Configuration: Shallow CNNProtocol: SugarBase taxonomy · Phylum (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Phylum Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 86.87(0.71)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.71; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Phylum Source checking is not independent reproduction. |
| Shallow CNN: SugarBase taxonomy · Order Configuration: Shallow CNNProtocol: SugarBase taxonomy · Order (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Order Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 47.01(1.86)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.86; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Order Source checking is not independent reproduction. |
| Shallow CNN: SugarBase taxonomy · Genus Configuration: Shallow CNNProtocol: SugarBase taxonomy · Genus (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Genus Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 38.88(1.24)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.24; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Genus Source checking is not independent reproduction. |
| Shallow CNN: SugarBase immunogenicity · Immuno Configuration: Shallow CNNProtocol: SugarBase immunogenicity · Immuno (GlycanML immunogenicity prediction)Dataset: SugarBase immunogenicity · Immuno Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.776(0.267) AUPRC Unit: dimensionless · Direction: higher | Uncertainty: type: standard deviation; value: 0.267; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Immuno Source checking is not independent reproduction. |
| Shallow CNN: SugarBase taxonomy · Species Configuration: Shallow CNNProtocol: SugarBase taxonomy · Species (GlycanML taxonomy prediction)Dataset: SugarBase taxonomy · Species Author-reported single-task models on the same held-out task; not a cross-paper ranking. SugarBase taxonomy: motif-frequency K-means cluster allocation 8:1:1. Author-reported evaluation · Evaluation metadata: needs review | ||
| 33.70(1.12)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 1.12; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Species Source checking is not independent reproduction. |
| Shallow CNN: GlyConnect glycosylation · Glycos Configuration: Shallow CNNProtocol: GlyConnect glycosylation · Glycos (GlycanML glycosylation type prediction)Dataset: GlyConnect glycosylation · Glycos Author-reported single-task models on the same held-out task; not a cross-paper ranking. Taxonomy, immunogenicity and glycosylation: motif-frequency K-means cluster allocation 8:1:1. Interaction: MMseqs2 protein clusters at minimum identity 0.5 allocated 8:1:1. Exact counts are attached to each column. Author-reported evaluation · Evaluation metadata: needs review | ||
| 97.22(0.44)% accuracy Unit: percent · Direction: higher | Uncertainty: type: standard deviation; value: 0.44; n: 3; unit: same as metric Scored: Not reported · Eligible: Not reported | source checkedGlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Table 3, row Shallow CNN, column Glycos Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-3766ff4dbb4f947a6fEvidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Shallow CNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings Individual claims | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, row Shallow CNN, column Domain Version: arXiv:2405.16206v1, 2024-05-25 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction Shallow CNN as evaluated in the cited study. Shallow CNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings Individual claims | GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning Table 3, row Shallow CNN, column Domain Version: arXiv:2405.16206v1, 2024-05-25 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- GlycanML: A Multi-Task and Multi-Structure Benchmark for Glycan Machine Learning · Original source · arXiv:2405.16206v1, 2024-05-25
Technical metadata and extraction receipts
Stable ID: paper-model-3766ff4dbb4f947a6f
- areas
- glycomics
- entity level
- method
- configuration type
- reported_configuration
- version
- Shallow CNN architecture in Table 2; single-task supervised encoder plus MLP; interaction additionally uses ESM-1b protein embeddings
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: expansion-p3-glycanml-2405-16206v1; source locator: Table 3, row Shallow CNN, column Domain; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.
Related records
- model: Shallow CNN: SugarBase taxonomy · Family
- model: Shallow CNN: SugarBase taxonomy · Class
- model: Shallow CNN: SugarBase taxonomy · Mean Acc
- model: Shallow CNN: GlyConnect glycosylation · Glycos
- model: Shallow CNN: SugarBase taxonomy · Kingdom
- model: Shallow CNN: SugarBase taxonomy · Phylum
- model: Shallow CNN: SugarBase immunogenicity · Immuno
- model: Shallow CNN: SugarBase taxonomy · Genus
- model: Shallow CNN: SugarBase taxonomy · Species
- model: Shallow CNN: LectinOracle interaction · Interaction
- model: Shallow CNN: SugarBase taxonomy · Order
- model: Shallow CNN: SugarBase taxonomy · Domain