Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
Configuration
Kraken 2
Kraken 2 as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 1:, row Kraken 2, column Recall; XML row8 column2At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-17. Review applies to the cited claims; unresolved fields are listed below. Numerical results retain their own review status.
How it works
Evaluation in this paper
Paper-specific evaluated pipeline; exact checkpoint not inferred from label
Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 1:, row Kraken 2, column Recall; XML row8 column2Evaluations and results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 3 metric rows. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Kraken 2: Species profiling on Dilthey2019 simulated long reads Configuration: Kraken 2Protocol: Species profiling on Dilthey2019 simulated long reads (Long-read taxonomic profiling)Dataset: Species profiling on Dilthey2019 simulated long reads Species-level recall/precision/F 1. MetaMaps results copied from original manuscript; other tool versions reported in Methods. 200,114 reads;96 strain design,94 strains with RefSeq species representatives; average read 4,997 bp. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.055 Precision Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 1:, row Kraken 2, column Precision; XML row8 column3 Source checking is not independent reproduction. |
| 0.976 Recall Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 1:, row Kraken 2, column Recall; XML row8 column2 Source checking is not independent reproduction. |
| 0.104 F1 score Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 1:, row Kraken 2, column F1 score; XML row8 column4 Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
No source-reviewed explanatory claims are recorded here yet.
Profile review details
Primary-source transcription and separate automated review. No human sign-off or experimental reproduction.
Stable record: paper-model-ea474ecfc6b8781968Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
2 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Evaluation in this paper Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet Table 1:, row Kraken 2, column Recall; XML row8 column2 Version: PMC archival version PMC11185576.2 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| Introduction Kraken 2 as evaluated in the cited study. Paper-specific evaluated pipeline; exact checkpoint not inferred from label Individual claims | Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet Table 1:, row Kraken 2, column Recall; XML row8 column2 Version: PMC archival version PMC11185576.2 | source checked automated source review · 2026-09-17 Audit detailsPrimary-source transcription and separate automated review. No human sign-off or experimental reproduction. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: needs review
- Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Original source · PMC archival version PMC11185576.2
Technical metadata and extraction receipts
Stable ID: paper-model-ea474ecfc6b8781968
- areas
- microbes-communities
- tasks
- Long-read taxonomic profiling
- entity level
- method
- configuration type
- reported_configuration
- version
- Paper-specific evaluated pipeline; exact checkpoint not inferred from label
- legacy kinds
- model
- entity classification
- review date: 2026-09-17; rationale: This source-scoped entry preserves the method/configuration actually named in an evaluation. It is neither a global family identity nor proof of an immutable checkpoint; the linked evaluation retains adaptation, fitting and scoring details.; source ids: part2-lemur-magnet-2024; source locator: Table 1:, row Kraken 2, column Recall; XML row8 column2; ambiguities: Configuration means the source-labelled evaluated identity. It does not establish missing checkpoint hashes, default settings or equivalence to same-named records in other papers.