model · method

NCD-gzip

NCD-gzip is the method recorded for CAMI II superkingdom read classification. This page preserves the configuration reported by Normalized compression distance for DNA classification.

2 evaluations · 2 metric rows

At a glance

Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.

Inputs, outputs and configuration
Property	Description and evidence
Recorded dataset	CAMI II Sample_0 10,000-read subsampleNormalized compression distance for DNA classification · Table 5, NCD Superkingdom row, F1 column; Table 5, NCD Phylum row, F1 column
Recorded dataset	CAMI II Sample_0 10,000-read subsampleNormalized compression distance for DNA classification · Table 5, NCD Superkingdom row, F1 column; Table 5, NCD Phylum row, F1 column
Model type	Not extracted or verified for this record.
Known versions	Not extracted or verified for this record.
Training data	Not extracted or verified for this record.
Context limits	Not extracted or verified for this record.
Access	Not extracted or verified for this record.
Code licence	Not extracted or verified for this record.
Weights licence	Not extracted or verified for this record.

How it works

Recorded evaluation

The imported evaluation describes this procedure: Superkingdom-level macro-averaged F1; NCD assigns every read. Phylum-level macro-averaged F1; distinct taxonomic rank from the other row.

Normalized compression distance for DNA classification · Table 5, NCD Superkingdom row, F1 column; Table 5, NCD Phylum row, F1 column

Benchmarks and results

Release 2026-09-16-d74d282221a9 · 2 evaluations · 2 metric rows. Different protocols are not a single leaderboard.

Evaluated configurationMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
NCD-gzip: CAMI II superkingdom read classification Model: NCD-gzip · Benchmark: CAMI II superkingdom read classification · Dataset: CAMI II Sample_0 10,000-read subsample Superkingdom-level macro-averaged F1; NCD assigns every read. Author-reported evaluation · Evaluation metadata: needs review
0.9804 Macro F1 Unit: unitless · Direction: unknown	Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported	source checkedNormalized compression distance for DNA classification · Table 5, NCD Superkingdom row, F1 column Source checking is not independent reproduction.
NCD-gzip: CAMI II phylum read classification Model: NCD-gzip · Benchmark: CAMI II phylum read classification · Dataset: CAMI II Sample_0 10,000-read subsample Phylum-level macro-averaged F1; distinct taxonomic rank from the other row. Author-reported evaluation · Evaluation metadata: needs review
0.1263 Macro F1 Unit: unitless · Direction: unknown	Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported	source checkedNormalized compression distance for DNA classification · Table 5, NCD Phylum row, F1 column Source checking is not independent reproduction.

Strengths and limitations

Strengths and considerations

No source-reviewed explanatory claims are recorded here yet.

Limitations and conditions

This is an evidence-limited profile. The recorded evaluation context does not establish performance on other datasets or configurations.Normalized compression distance for DNA classification · Table 5, NCD Superkingdom row, F1 column; Table 5, NCD Phylum row, F1 column

Profile review details

Reviewed the existing release record, its source pointer and linked evaluation context. This is not a fresh full-text architecture review or independent reproduction; numerical review status is unchanged.

Stable record: reported-model-7b052acf17b5ba

Sources and history

Release 2026-09-16-d74d282221a9 · Record review: needs review

Normalized compression distance for DNA classification · Original source · version of record

Download this release

Technical metadata and extraction receipts

Stable ID: reported-model-7b052acf17b5ba

areas: microbes-communities
entity level: method
version: Not reported
reported name: NCD-gzip
missing metadata: version: not_reported_in_legacy_extract; checkpoint revision: not_reported_in_legacy_extract; training data: not_reported_in_legacy_extract; licence: not_reported_in_legacy_extract

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