result · source checked
0.1263 Macro F1
NCD-gzip · Macro F1 · CAMI II Sample_0 10,000-read subsample
- Tested model
- NCD-gzip
- Task or benchmark
- CAMI II phylum read classification
- Dataset
- CAMI II Sample_0 10,000-read subsample
- Procedure
- Phylum-level macro-averaged F1; distinct taxonomic rank from the other row.
- Evaluation
- NCD-gzip: CAMI II phylum read classification
- Evidence
- Author-reported evaluation · source checkedNormalized compression distance for DNA classification · Table 5, NCD Phylum row, F1 column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| NCD-gzip: CAMI II phylum read classification Model: NCD-gzip · Benchmark: CAMI II phylum read classification · Dataset: CAMI II Sample_0 10,000-read subsample Phylum-level macro-averaged F1; distinct taxonomic rank from the other row. Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.1263 Macro F1 Unit: unitless · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedNormalized compression distance for DNA classification · Table 5, NCD Phylum row, F1 column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- Normalized compression distance for DNA classification · Original source · version of record
Technical metadata and extraction receipts
Stable ID: lit-b3-024
- areas
- microbes-communities
- tasks
- CAMI II phylum read classification
- printed value
- 0.1263
- numeric value
- 0.1263
- metric
- Macro F1
- metric direction
- unknown
- unit
- unitless
- uncertainty
- Not reported
- source locator
- Table 5, NCD Phylum row, F1 column
- review
- method: independent_ai_table_review; reviewer: Codex omics research agent; independent source-table review, not human review; reviewed at: 2026-09-16T10:44:03.415788+00:00; notes: NCD rank-specific table 5, F1 column; Superkingdom and Phylum are different classification granularities. Source check verifies central value and table context, not experiment reproduction or all metadata.; evidence: {"table_xml_id": "table-5", "row_cells": ["Phylum", "0.1336", "0.1637", "0.1263", "0.2709"], "selected_cell_zero_based": 3, "selected_cell_xml": "<td rowspan=\"1\" colspan=\"1\">0.1263</td>", "caption": "Taxonomic classification on the CAMI II 10,000-read subsample (Sample_0).Metrics are macro-averaged (recall, precision, F1) and micro-averaged (accuracy). NCD uses genome fragmentation (‘Genome fragmentation’) and assigns every read; Kraken2 uses low-confidence assignments and leaves 61.4% unclassified."}; artifact sha256: 10e9ba780c45e7787baff9b81ef7b45c014d7fe6c716d6c759e14d89a813dc1c; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12884959/fullTextXML
- legacy id
- lit-b3-024
- legacy row
- id: lit-b3-024; paper id: ncd-metagenomics-2026; domain id: microbes-communities; task: CAMI II phylum read classification; model: NCD-gzip; model version: Not reported; dataset: CAMI II Sample_0 10,000-read subsample; dataset version: 10,000 reads; split: Not reported; metric: Macro F1; value: 0.1263; unit: unitless; uncertainty: Not reported; protocol: Phylum-level macro-averaged F1; distinct taxonomic rank from the other row.; source locator: Table 5, NCD Phylum row, F1 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12884959/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:29:32Z
- missing metadata
- model version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: NCD-gzip: CAMI II phylum read classification
- subject: Reported Macro F1 for NCD-gzip