MIMIC mRNABench probes RNA Localization: RNA Localization prediction
RNA Localization prediction. Scored with AUPR on mRNABench RNA Localization as reported in MIMIC Table S11. MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
Overview
RNA Localization prediction. Scored with AUPR on mRNABench RNA Localization as reported in MIMIC Table S11. MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Results
Each comparison retains its reviewed evaluation scope, dataset and metric. Results are shown without a pooled ranking.
MIMIC mRNABench probes RNA Localization: RNA Localization prediction
auprc (fraction) · Higher values are better.
Every method MIMIC mRNABench probes reports on RNA Localization prediction, scored with AUPR on mRNABench RNA Localization as reported in MIMIC Table S11.
MIMIC mRNABench probes RNA Localization: RNA Localization prediction · mRNABench RNA Localization as reported in MIMIC Table S11 (MIMIC mRNABench probes split)
Evidence origin: Author-reported evaluation, Result quoted from another source. Numerical source review does not establish independent reproduction.
MIMIC v1: Table S11 and Appendix D.3 · Table S11 (HTML A4.T11), RNA Localization column; Appendix D.3MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments.
All comparison limitations (4)
- MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments.
- MIMIC can use additional coding/protein modalities. This is not a matched nucleotide-only comparison.
- The table prints AUPR for RNA localization; the prior mRNABench appendix has a conflicting metric label. Do not pool this source-specific comparison with that appendix.
- Exact fitted checkpoints, scored counts and uncertainty are not supplied by Table S11.
Automated source review: 2026-09-23.
No unavailable values; missing scores remain labelled and are never plotted as zero.
Showing 12 of 12 matching rows.
Dots show point estimates. Whiskers show only explicitly defined uncertainty (standard deviation, standard error or a labelled interval); their definitions remain in Table. Unresolved uncertainty is not plotted. Differences do not establish statistical significance.
Methods and evaluation design
Procedure, tasks and evaluated configurations
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- AIDO-RNA on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- Dilated ResNet on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- DNABERT-S on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- DNABERT2 on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- ERNIE-RNA on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- Evo2 on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- HyenaDNA on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- MIMIC on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- NT-v2 on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- Orthrus on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- RiNALMo on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- SpliceBERT on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
Baseline coverage
Reference methods help show what a model adds beyond simple controls. We track a null control and a conventional method for each protocol.
0 of 2 active baseline roles have published Rewire measurements in this release. Measurements on a selected protocol do not establish coverage of an entire suite.
No execution recipe linked to this protocol. Recipe availability does not establish a completed evaluation.
- Author-reported evaluations
- 1
- paper compilation
- 11
Literature evidence is not a Rewire measurement. Executed but unpublished runs and private review status are not included.
Null control
Proposed control: requires review
Training-set mean where supervised fitting is permitted
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Conventional reference
Proposed control: requires review
Simple features with train-only ridge regression
Protocol-specific applicability, permitted inputs, access, split, evaluator and execution requirements need review before implementation or execution.
This is a suggested selection rule, not a validated method or a measured score.
Protocol coverage CSV · Model evaluation matrix · Source table · Release and checksums
Coverage is derived from release 2026-09-23-2b89723c6dd9. Source citations describe the original records; they do not validate an unreviewed baseline proposal. No results have been generated by this audit.
Run instructions
No runnable recipe has been reviewed for this protocol. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
Strengths, limitations and unresolved questions
Evidence
Source checking verifies the cited claim or transcription. It does not establish independent reproduction.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-mrnabench Individual claims | MIMIC v1: Table S11 and Appendix D.3 Table S11 (HTML A4.T11), RNA Localization column; Appendix D.3 Version: arXiv version 1 | source checked automated source review · 2026-09-23 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: mimic-2026-mrnabench-association-rna-localization Source artifact SHA-256: Hash scope: Hash scope not separately documented; inspect source record |
Sources and history
View linked audit checks and correction history
Release 2026-09-23-2b89723c6dd9 · Record review: source checked
1 source records and release history
- MIMIC v1: Table S11 and Appendix D.3 · Original source · arXiv version 1
Technical metadata and extraction receipts
Stable ID: mimic-2026-mrnabench-task-rna-localization
- areas
- molecular-omics
- tasks
- RNA Localization prediction
- metric
- AUPR
- metric direction
- higher
- dataset
- mRNABench RNA Localization as reported in MIMIC Table S11
- protocol
- MIMIC uses concatenated register tokens and mean-pooled RNA-track representations with supervised probes. Nucleotide/codon/amino-acid conditioning is selected per task on validation data; predictions are averaged across selected modality subsets. Comparator scores are quoted from prior mRNABench work.
- source locator
- Table S11 (HTML A4.T11), RNA Localization column; Appendix D.3
- comparison panels
- id: mimic-2026-mrnabench-panel-rna-localization; title: MIMIC mRNABench probes RNA Localization: RNA Localization prediction; protocol id: mimic-2026-mrnabench-task-rna-localization; dataset id: mimic-2026-mrnabench-dataset-mrnabench-rna-localization-as-reported-in-mimic-table-s11; metric: auprc; unit: fraction; direction: higher; result ids: mimic-2026-mrnabench-result-mimic-rna-localization-auprc; mimic-2026-mrnabench-result-aido-rna-rna-localization-auprc; mimic-2026-mrnabench-result-dilated-resnet-rna-localization-auprc; mimic-2026-mrnabench-result-dnabert2-rna-localization-auprc; mimic-2026-mrnabench-result-dnabert-s-rna-localization-auprc; mimic-2026-mrnabench-result-ernie-rna-rna-localization-auprc; mimic-2026-mrnabench-result-evo2-rna-localization-auprc; mimic-2026-mrnabench-result-hyenadna-rna-localization-auprc; mimic-2026-mrnabench-result-nt-v2-rna-localization-auprc; mimic-2026-mrnabench-result-orthrus-rna-localization-auprc; mimic-2026-mrnabench-result-rinalmo-rna-localization-auprc; mimic-2026-mrnabench-result-splicebert-rna-localization-auprc; source ids: coverage-source-mimic-2026-v1-html; source locator: Table S11 (HTML A4.T11), RNA Localization column; Appendix D.3; context: Every method MIMIC mRNABench probes reports on RNA Localization prediction, scored with AUPR on mRNABench RNA Localization as reported in MIMIC Table S11.; caveats: MIMIC results are reported here; every comparator is explicitly quoted from prior mRNABench work (Appendix D.3), not rerun. Do not count quoted rows as independent experiments.; MIMIC can use additional coding/protein modalities. This is not a matched nucleotide-only comparison.; The table prints AUPR for RNA localization; the prior mRNABench appendix has a conflicting metric label. Do not pool this source-specific comparison with that appendix.; Exact fitted checkpoints, scored counts and uncertainty are not supplied by Table S11.; review: method: automated_source_review; date: 2026-09-23
- entity level
- protocol
Related records
- part of: mRNABench
- subject: MIMIC mRNABench probes RNA Localization: part of discovery-benchmark-mrnabench
- benchmark: AIDO-RNA on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: Dilated ResNet on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: DNABERT-S on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: DNABERT2 on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: ERNIE-RNA on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: Evo2 on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: HyenaDNA on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: MIMIC on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: NT-v2 on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: Orthrus on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: RiNALMo on MIMIC mRNABench probes RNA Localization: RNA Localization prediction
- benchmark: SpliceBERT on MIMIC mRNABench probes RNA Localization: RNA Localization prediction