result · source checked
85.12 F1
DNABERT-2 · F1 · GenomeOcean natural/artificial sequence test
- Tested model
- DNABERT-2
- Task or benchmark
- Natural vs artificial microbial genome sequence
- Dataset
- GenomeOcean natural/artificial sequence test
- Procedure
- Source reports natural-versus-artificial sequence classification.
- Evaluation
- DNABERT-2: Natural vs artificial microbial genome sequence
- Evidence
- Independent external evaluation · source checkedGenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2, DNABERT-2 row, F1 column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| DNABERT-2: Natural vs artificial microbial genome sequence Model: DNABERT-2 · Benchmark: Natural vs artificial microbial genome sequence · Dataset: GenomeOcean natural/artificial sequence test Source reports natural-versus-artificial sequence classification. Independent external evaluation · Evaluation metadata: needs review | ||
| 85.12 F1 Unit: % · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedGenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Table 2, DNABERT-2 row, F1 column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- GenomeOcean: An Efficient Genome Foundation Model Trained on Large-Scale Metagenomic Assemblies · Original source · preprint archived 2025-02-05
Technical metadata and extraction receipts
Stable ID: lit-b3-028
- areas
- microbes-communities
- tasks
- Natural vs artificial microbial genome sequence
- printed value
- 85.12
- numeric value
- 85.12
- metric
- F1
- metric direction
- unknown
- unit
- %
- uncertainty
- Not reported
- source locator
- Table 2, DNABERT-2 row, F1 column
- review
- method: primary_xml_exact_label_cell_check; reviewer: rewire deterministic table checker v1; reviewed at: 2026-09-16T10:33:55.224Z; notes: Exact row/header labels and numeric cell matched. Check verifies transcription, not experimental correctness.; evidence: Table 2, DNABERT-2 row, F1 column; cell: 85.12; artifact sha256: 3cc0df52522fccda23e3958f069c916b87ee50bb5c9a992fa37e25256546e145; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11838515/fullTextXML
- legacy id
- lit-b3-028
- legacy row
- id: lit-b3-028; paper id: genomeocean-2025; domain id: microbes-communities; task: Natural vs artificial microbial genome sequence; model: DNABERT-2; model version: Not reported; dataset: GenomeOcean natural/artificial sequence test; dataset version: Not reported; split: Not reported; metric: F1; value: 85.12; unit: %; uncertainty: Not reported; protocol: Source reports natural-versus-artificial sequence classification.; source locator: Table 2, DNABERT-2 row, F1 column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11838515/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:29:32Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: DNABERT-2: Natural vs artificial microbial genome sequence
- subject: Reported F1 for DNABERT-2