result · source checked
0.725 AUROC
PlantCAD2 · AUROC · Andropogoneae genome-wide conservation
- Tested model
- PlantCAD2
- Task or benchmark
- cross-species conservation prediction
- Dataset
- Andropogoneae genome-wide conservation
- Procedure
- Zero-shot score for conserved versus non-conserved sites from alignments of 35 Andropogoneae genomes
- Evaluation
- PlantCAD2: cross-species conservation prediction
- Evidence
- Author-reported evaluation · source checkedPlantCAD2: A Long-Context DNA Language Model for Cross-Species Functional Annotation in Angiosperms · Table 1, Cross-species evolutionary conservation > Conservation within Andropogoneae (Genome-wide) row, PlantCAD2 AUROC entry
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| PlantCAD2: cross-species conservation prediction Model: PlantCAD2 · Benchmark: cross-species conservation prediction · Dataset: Andropogoneae genome-wide conservation Zero-shot score for conserved versus non-conserved sites from alignments of 35 Andropogoneae genomes Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.725 AUROC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedPlantCAD2: A Long-Context DNA Language Model for Cross-Species Functional Annotation in Angiosperms · Table 1, Cross-species evolutionary conservation > Conservation within Andropogoneae (Genome-wide) row, PlantCAD2 AUROC entry Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- PlantCAD2: A Long-Context DNA Language Model for Cross-Species Functional Annotation in Angiosperms · Original source · preprint version in PMC
Technical metadata and extraction receipts
Stable ID: lit-b4-002
- areas
- dna-genomes
- tasks
- cross-species conservation prediction
- printed value
- 0.725
- numeric value
- 0.725
- metric
- AUROC
- metric direction
- unknown
- unit
- fraction
- uncertainty
- Not reported
- source locator
- Table 1, Cross-species evolutionary conservation > Conservation within Andropogoneae (Genome-wide) row, PlantCAD2 AUROC entry
- review
- method: independent_ai_table_review; reviewer: Codex primary curator table review; reviewed at: 2026-09-16T10:41:06Z; notes: First comparison entry is PlantCAD2; AUROC is 0.725 versus comparator 0.691. Transcription verified; experimental claims not independently reproduced.; evidence: 0.725 vs 0.691; artifact sha256: 4891955edb33af61e36dad51110574aa242e77c2df36429f100ff5a54bd8bd4b; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12425018/fullTextXML
- legacy id
- lit-b4-002
- legacy row
- id: lit-b4-002; paper id: plantcad2-2025; domain id: dna-genomes; task: cross-species conservation prediction; model: PlantCAD2; model version: Not reported; dataset: Andropogoneae genome-wide conservation; dataset version: Not reported; split: Not reported; metric: AUROC; value: 0.725; unit: fraction; uncertainty: Not reported; protocol: Zero-shot score for conserved versus non-conserved sites from alignments of 35 Andropogoneae genomes; source locator: Table 1, Cross-species evolutionary conservation > Conservation within Andropogoneae (Genome-wide) row, PlantCAD2 AUROC entry; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12425018/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:37:05Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; split: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: PlantCAD2: cross-species conservation prediction
- subject: Reported AUROC for PlantCAD2