0.91 precision at 50% recall
scGen · precision at 50% recall · stimulated immune PBMC
- Tested model
- scGen
- Task or benchmark
- differentially expressed gene identification
- Dataset
- stimulated immune PBMC
- Procedure
- In-silico perturbation assessment with precision sampled at fixed 50% recall
- Evaluation
- scGen: differentially expressed gene identification
- Evidence
- Independent external evaluation · source checkedAUPRC: a metric for evaluating the performance of in-silico perturbation methods in identifying differentially expressed genes · Table 3, CD14+Mono section, scGen row, Precision at 50% Recall column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| scGen: differentially expressed gene identification Model: scGen · Benchmark: differentially expressed gene identification · Dataset: stimulated immune PBMC In-silico perturbation assessment with precision sampled at fixed 50% recall Independent external evaluation · Evaluation metadata: needs review | ||
| 0.91 precision at 50% recall Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedAUPRC: a metric for evaluating the performance of in-silico perturbation methods in identifying differentially expressed genes · Table 3, CD14+Mono section, scGen row, Precision at 50% Recall column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- AUPRC: a metric for evaluating the performance of in-silico perturbation methods in identifying differentially expressed genes · Original source · PMC archival version PMC12400816.1
Technical metadata and extraction receipts
Stable ID: lit-b4-016
- areas
- cells-tissues
- tasks
- differentially expressed gene identification
- printed value
- 0.91
- numeric value
- 0.91
- metric
- precision at 50% recall
- metric direction
- unknown
- unit
- fraction
- uncertainty
- Not reported
- source locator
- Table 3, CD14+Mono section, scGen row, Precision at 50% Recall column
- review
- method: independent_ai_table_review; reviewer: Codex primary curator table review; reviewed at: 2026-09-16T10:41:06Z; notes: CD14+Mono scGen; precision at50%recall. Transcription verified; experimental claims not independently reproduced.; evidence: 0.91; artifact sha256: 2715709d94f84744afa32cafdcaa72efd206d63af8c60afe7619b2cb90108b6b; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC12400816/fullTextXML
- legacy id
- lit-b4-016
- legacy row
- id: lit-b4-016; paper id: insilico-perturbation-auprc-2025; domain id: cells-tissues; task: differentially expressed gene identification; model: scGen; model version: Not reported; dataset: stimulated immune PBMC; dataset version: Not reported; split: CD14+Mono; metric: precision at 50% recall; value: 0.91; unit: fraction; uncertainty: Not reported; protocol: In-silico perturbation assessment with precision sampled at fixed 50% recall; source locator: Table 3, CD14+Mono section, scGen row, Precision at 50% Recall column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC12400816/; evaluation origin: independent_paper; reviewed utc: 2026-09-15T23:37:05Z
- missing metadata
- model version: not_reported_in_legacy_extract; dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract