0.932 F1 score
Sourmash: F1 score on Species profiling on Dilthey2019 simulated long reads
- Tested configuration
- Sourmash
- Protocol
- Species profiling on Dilthey2019 simulated long reads (Long-read taxonomic profiling)
- Dataset
- Species profiling on Dilthey2019 simulated long reads
- Procedure
- Species-level recall/precision/F 1. MetaMaps results copied from original manuscript; other tool versions reported in Methods. 200,114 reads;96 strain design,94 strains with RefSeq species representatives; average read 4,997 bp.
- Evaluation
- Sourmash: Species profiling on Dilthey2019 simulated long reads
- Evidence
- Independent external evaluation · source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 1:, row Sourmash, column F1 score; XML row6 column4
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-17-d277315f7d76 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Sourmash: Species profiling on Dilthey2019 simulated long reads Configuration: SourmashProtocol: Species profiling on Dilthey2019 simulated long reads (Long-read taxonomic profiling)Dataset: Species profiling on Dilthey2019 simulated long reads Species-level recall/precision/F 1. MetaMaps results copied from original manuscript; other tool versions reported in Methods. 200,114 reads;96 strain design,94 strains with RefSeq species representatives; average read 4,997 bp. Independent external evaluation · Evaluation metadata: needs review | ||
| 0.932 F1 score Unit: fraction · Direction: higher | Uncertainty: unreported Scored: Not reported · Eligible: Not reported | source checkedLightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Table 1:, row Sourmash, column F1 score; XML row6 column4 Source checking is not independent reproduction. |
Evidence table
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Reported result 0.932 Individual claims | Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet Table 1:, row Sourmash, column F1 score; XML row6 column4 Version: PMC archival version PMC11185576.2 | source checked Primary-table transcription and separate automated source review · 2026-09-17 independent paper Audit detailsSource checked does not mean experimentally reproduced. Field: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-d277315f7d76 · Record review: source checked
- Lightweight taxonomic profiling of long-read metagenomic datasets with Lemur and Magnet · Original source · PMC archival version PMC11185576.2
Technical metadata and extraction receipts
Stable ID: paper-result-03860ee74178c46356
- areas
- microbes-communities
- tasks
- Long-read taxonomic profiling
- printed value
- 0.932
- numeric value
- 0.932
- metric
- F1 score
- metric direction
- higher
- unit
- fraction
- uncertainty
- Not reported
- eligible count
- Not reported
- scored count
- Not reported
- reported population
- Not reported
- source locator
- Table 1:, row Sourmash, column F1 score; XML row6 column4
- source occurrences
- source id: part2-lemur-magnet-2024; locator: Table 1:, row Sourmash, column F1 score; XML row6 column4
- review
- method: Primary-table transcription and separate automated source review; date: 2026-09-17; note: Source checked does not mean experimentally reproduced.
- missing metadata
- scored count: unreported; eligible count: unextracted; checkpoint revision: unextracted; uncertainty: unreported