DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
Regulatory element identification, paired accuracy. Scored with Paired accuracy on ENCODE cCREs against dinucleotide-shuffled backgrounds. Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name.
Overview
Regulatory element identification, paired accuracy. Scored with Paired accuracy on ENCODE cCREs against dinucleotide-shuffled backgrounds. Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- Caduceus (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- Caduceus (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- DNABERT-2 (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- DNABERT-2 (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- GENA-LM (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- GENA-LM (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- HyenaDNA (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- HyenaDNA (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- Mistral-DNA (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- Mistral-DNA (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- Nucleotide Transformer (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- Nucleotide Transformer (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
paired_accuracy (fraction) · Higher values are better for this metric.
Every method DART-Eval reports on Regulatory element identification, paired accuracy, scored with Paired accuracy on ENCODE cCREs against dinucleotide-shuffled backgrounds.
Evaluation protocol · ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split)
- Caduceus (probed) · Configuration · Author-reported evaluation0.896
- Caduceus (fine-tuned) · Configuration · Author-reported evaluation0.971
- DNABERT-2 (probed) · Configuration · Author-reported evaluation0.943
- DNABERT-2 (fine-tuned) · Configuration · Author-reported evaluation0.973
- GENA-LM (probed) · Configuration · Author-reported evaluation0.959
- GENA-LM (fine-tuned) · Configuration · Author-reported evaluation0.972
- HyenaDNA (probed) · Configuration · Author-reported evaluation0.935
- HyenaDNA (fine-tuned) · Configuration · Author-reported evaluation0.952
- Mistral-DNA (probed) · Configuration · Author-reported evaluation0.859
- Mistral-DNA (fine-tuned) · Configuration · Author-reported evaluation0.905
- Nucleotide Transformer (probed) · Configuration · Author-reported evaluation0.917
- Nucleotide Transformer (fine-tuned) · Configuration · Author-reported evaluation0.976
- Probing-head-like (ab initio) · Method · Author-reported evaluation0.932
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, column(Paired accuracy)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| Caduceus (probed) · Configuration | 0.896 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Caduceus), column(probed paired_accuracy) |
| Caduceus (fine-tuned) · Configuration | 0.971 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Caduceus), column(fine-tuned paired_accuracy) |
| DNABERT-2 (probed) · Configuration | 0.943 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(DNABERT-2), column(probed paired_accuracy) |
| DNABERT-2 (fine-tuned) · Configuration | 0.973 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) |
| GENA-LM (probed) · Configuration | 0.959 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(GENA-LM), column(probed paired_accuracy) |
| GENA-LM (fine-tuned) · Configuration | 0.972 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(GENA-LM), column(fine-tuned paired_accuracy) |
| HyenaDNA (probed) · Configuration | 0.935 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(HyenaDNA), column(probed paired_accuracy) |
| HyenaDNA (fine-tuned) · Configuration | 0.952 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(HyenaDNA), column(fine-tuned paired_accuracy) |
| Mistral-DNA (probed) · Configuration | 0.859 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Mistral-DNA), column(probed paired_accuracy) |
| Mistral-DNA (fine-tuned) · Configuration | 0.905 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Mistral-DNA), column(fine-tuned paired_accuracy) |
| Nucleotide Transformer (probed) · Configuration | 0.917 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Nucleotide Transformer), column(probed paired_accuracy) |
| Nucleotide Transformer (fine-tuned) · Configuration | 0.976 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Nucleotide Transformer), column(fine-tuned paired_accuracy) |
| Probing-head-like (ab initio) · Method | 0.932 fraction | Not reported | Author-reported evaluation · source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Ab initio Probing-head-like), column(ab initio paired_accuracy) |
Scope and limitations
- Author-reported numbers, source checked but not independently reproduced.
- The evaluation setting is part of the method name: a zero-shot, probed and fine-tuned run of the same model are different entries.
- Metrics and datasets differ between tasks, so these figures cannot be averaged into one score.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 13 evaluations · 13 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| Caduceus (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: Caduceus (fine-tuned)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.971 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Caduceus), column(fine-tuned paired_accuracy) Source checking is not independent reproduction. |
| Caduceus (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: Caduceus (probed)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.896 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Caduceus), column(probed paired_accuracy) Source checking is not independent reproduction. |
| DNABERT-2 (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: DNABERT-2 (fine-tuned)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.973 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(DNABERT-2), column(fine-tuned paired_accuracy) Source checking is not independent reproduction. |
| DNABERT-2 (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: DNABERT-2 (probed)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.943 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(DNABERT-2), column(probed paired_accuracy) Source checking is not independent reproduction. |
| GENA-LM (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: GENA-LM (fine-tuned)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.972 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(GENA-LM), column(fine-tuned paired_accuracy) Source checking is not independent reproduction. |
| GENA-LM (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: GENA-LM (probed)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.959 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(GENA-LM), column(probed paired_accuracy) Source checking is not independent reproduction. |
| HyenaDNA (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: HyenaDNA (fine-tuned)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.952 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(HyenaDNA), column(fine-tuned paired_accuracy) Source checking is not independent reproduction. |
| HyenaDNA (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: HyenaDNA (probed)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.935 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(HyenaDNA), column(probed paired_accuracy) Source checking is not independent reproduction. |
| Mistral-DNA (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: Mistral-DNA (fine-tuned)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.905 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Mistral-DNA), column(fine-tuned paired_accuracy) Source checking is not independent reproduction. |
| Mistral-DNA (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: Mistral-DNA (probed)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.859 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Mistral-DNA), column(probed paired_accuracy) Source checking is not independent reproduction. |
| Nucleotide Transformer (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: Nucleotide Transformer (fine-tuned)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.976 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Nucleotide Transformer), column(fine-tuned paired_accuracy) Source checking is not independent reproduction. |
| Nucleotide Transformer (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Configuration: Nucleotide Transformer (probed)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.917 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Nucleotide Transformer), column(probed paired_accuracy) Source checking is not independent reproduction. |
| Probing-head-like (ab initio) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy Method: Probing-head-like (ab initio)Task: DART-Eval REI-PAIR: Regulatory element identification, paired accuracyDataset subset: ENCODE cCREs against dinucleotide-shuffled backgrounds (DART-Eval split) Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name. Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.932 paired_accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedDART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Table 3, row(Ab initio Probing-head-like), column(ab initio paired_accuracy) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-dart-eval Individual claims | DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA Table 3, column(Paired accuracy) Version: 2412.05430v1 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: dart-eval-association-rei-pair Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
- DART-Eval: A Comprehensive DNA Language Model Evaluation Benchmark on Regulatory DNA · Original source · 2412.05430v1
Technical metadata and extraction receipts
Stable ID: dart-eval-task-rei-pair
- areas
- dna-genomes
- tasks
- Regulatory element identification, paired accuracy
- metric
- Paired accuracy
- metric direction
- higher
- dataset
- ENCODE cCREs against dinucleotide-shuffled backgrounds
- protocol
- Distinguish ENCODE cCREs from dinucleotide-shuffled background sequences. The setting the model was run in is part of the method name.
- source locator
- Table 3, column(Paired accuracy)
- comparison panels
- id: dart-eval-panel-rei-pair; title: DART-Eval REI-PAIR: Regulatory element identification, paired accuracy; protocol id: dart-eval-task-rei-pair; dataset id: dart-eval-dataset-encode-ccres-against-dinucleotide-shuffled-backgrounds; metric: paired_accuracy; unit: fraction; direction: higher; result ids: dart-eval-result-caduceus-probed-rei-pair-paired-accuracy; dart-eval-result-caduceus-fine-tuned-rei-pair-paired-accuracy; dart-eval-result-dnabert-2-probed-rei-pair-paired-accuracy; dart-eval-result-dnabert-2-fine-tuned-rei-pair-paired-accuracy; dart-eval-result-gena-lm-probed-rei-pair-paired-accuracy; dart-eval-result-gena-lm-fine-tuned-rei-pair-paired-accuracy; dart-eval-result-hyenadna-probed-rei-pair-paired-accuracy; dart-eval-result-hyenadna-fine-tuned-rei-pair-paired-accuracy; dart-eval-result-mistral-dna-probed-rei-pair-paired-accuracy; dart-eval-result-mistral-dna-fine-tuned-rei-pair-paired-accuracy; dart-eval-result-nucleotide-transformer-probed-rei-pair-paired-accuracy; dart-eval-result-nucleotide-transformer-fine-tuned-rei-pair-paired-accuracy; dart-eval-result-probing-head-like-ab-initio-rei-pair-paired-accuracy; source ids: evidence-expansion-p2-evidence-discovery-final-dart-4194b137ba55; source locator: Table 3, column(Paired accuracy); context: Every method DART-Eval reports on Regulatory element identification, paired accuracy, scored with Paired accuracy on ENCODE cCREs against dinucleotide-shuffled backgrounds.; caveats: Author-reported numbers, source checked but not independently reproduced.; The evaluation setting is part of the method name: a zero-shot, probed and fine-tuned run of the same model are different entries.; Metrics and datasets differ between tasks, so these figures cannot be averaged into one score.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: DART-Eval
- subject: DART-Eval REI-PAIR: part of discovery-benchmark-dart-eval
- benchmark: Caduceus (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: Caduceus (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: DNABERT-2 (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: DNABERT-2 (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: GENA-LM (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: GENA-LM (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: HyenaDNA (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: HyenaDNA (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: Mistral-DNA (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: Mistral-DNA (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: Nucleotide Transformer (fine-tuned) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: Nucleotide Transformer (probed) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy
- benchmark: Probing-head-like (ab initio) on DART-Eval REI-PAIR: Regulatory element identification, paired accuracy