This paper-specific evaluation tests ClinVar 3-prime UTR variant classification using ClinVar 3-prime UTR variants.
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Record type | Paper-specific task; protocol incompletely extractedA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column |
| Inputs | ClinVar 3-prime UTR variantsA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column |
| Assessment | AUROCA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column |
| Recorded split or evaluation setting | paper evaluationA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column |
| Datasets | Not extracted or verified for this record. |
| Organisms | Not extracted or verified for this record. |
| Assays | Not extracted or verified for this record. |
| Adaptation | Not extracted or verified for this record. |
| Baselines | Not extracted or verified for this record. |
Outline of the existing paper extraction. Split membership, fitting details and scorer implementation remain incompletely reviewed.
The existing paper extraction describes: log-likelihood-ratio scoring. This description is retained with the exact evaluation records; it is not a new protocol reconstruction.
A Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC columnRelease 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| PhyloGPN: ClinVar 3-prime UTR variant classification Model: PhyloGPN · Benchmark: ClinVar 3-prime UTR variant classification · Dataset: ClinVar 3-prime UTR variants log-likelihood-ratio scoring Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.94 AUROC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column Source checking is not independent reproduction. |
Catalogue extraction inspected; protocol claims remain limited to the cited evidence. Missing details are not presumed absent from the original paper.
Stable record: reported-task-ed3dd3b83c4505Release 2026-09-16-d74d282221a9 · Record review: needs review
Stable ID: reported-task-ed3dd3b83c4505