result · source checked
0.94 AUROC
PhyloGPN · AUROC · ClinVar 3-prime UTR variants
- Tested model
- PhyloGPN
- Task or benchmark
- ClinVar 3-prime UTR variant classification
- Dataset
- ClinVar 3-prime UTR variants
- Procedure
- log-likelihood-ratio scoring
- Evaluation
- PhyloGPN: ClinVar 3-prime UTR variant classification
- Evidence
- Author-reported evaluation · source checkedA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column
A source-checked result verifies the numerical transcription, not every model or protocol detail. Evaluation metadata: needs review. Source checked does not mean independently reproduced.
Evaluation results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| PhyloGPN: ClinVar 3-prime UTR variant classification Model: PhyloGPN · Benchmark: ClinVar 3-prime UTR variant classification · Dataset: ClinVar 3-prime UTR variants log-likelihood-ratio scoring Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.94 AUROC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column Source checking is not independent reproduction. |
Sources and history
Release 2026-09-16-d74d282221a9 · Record review: source checked
- A Phylogenetic Approach to Genomic Language Modeling · Original source · preprint version in PMC
Technical metadata and extraction receipts
Stable ID: b2-phylogpn-2025
- areas
- dna-genomes
- tasks
- ClinVar 3-prime UTR variant classification
- printed value
- 0.94
- numeric value
- 0.94
- metric
- AUROC
- metric direction
- unknown
- unit
- fraction
- uncertainty
- Not reported
- source locator
- Table 1, 3-prime UTR row, PhyloGPN AUROC column
- review
- method: independent_ai_table_review; reviewer: Codex secondary table review; reviewed at: 2026-09-16T10:38:57.558218+00:00; notes: Matched 3-prime UTR row and PhyloGPN column (0.94). Caption specifies log-likelihood-ratio predictions of ClinVar classes and explicitly defines each cell as AUROC.; evidence: Original PMC XML table headers, row groups and caption inspected; printed value 0.94.; artifact sha256: 807f3a26cbfa9b5ce238d92164bd523302c67d1c5794b08273c51cca1acd4224; retrieval url: https://www.ebi.ac.uk/europepmc/webservices/rest/PMC11908359/fullTextXML
- legacy id
- b2-phylogpn-2025
- legacy row
- id: b2-phylogpn-2025; paper id: phylogpn-2025; domain id: dna-genomes; task: ClinVar 3-prime UTR variant classification; model: PhyloGPN; model version: not stated in table; dataset: ClinVar 3-prime UTR variants; dataset version: Not reported; split: paper evaluation; metric: AUROC; value: 0.94; unit: fraction; uncertainty: Not reported; protocol: log-likelihood-ratio scoring; source locator: Table 1, 3-prime UTR row, PhyloGPN AUROC column; source url: https://pmc.ncbi.nlm.nih.gov/articles/PMC11908359/; evaluation origin: author_reported; reviewed utc: 2026-09-15T23:33:26Z
- missing metadata
- dataset version: not_reported_in_legacy_extract; uncertainty: not_reported_in_legacy_extract
Related records
- evaluation: PhyloGPN: ClinVar 3-prime UTR variant classification
- subject: Reported AUROC for PhyloGPN