Strengths and considerations
No source-reviewed explanatory claims are recorded here yet.
model · method
PhyloGPN
PhyloGPN is the method recorded for ClinVar 3-prime UTR variant classification. This page preserves the configuration reported by A Phylogenetic Approach to Genomic Language Modeling.
At a glance
Explanatory profile: limited source coverage · Automated source review, 2026-09-16. This does not change the review status of its results.
| Property | Description and evidence |
|---|---|
| Recorded dataset | ClinVar 3-prime UTR variantsA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column |
| Recorded split | paper evaluationA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column |
| Recorded configuration | not stated in tableA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column |
| Model type | Not extracted or verified for this record. |
| Training data | Not extracted or verified for this record. |
| Context limits | Not extracted or verified for this record. |
| Access | Not extracted or verified for this record. |
| Code licence | Not extracted or verified for this record. |
| Weights licence | Not extracted or verified for this record. |
How it works
Recorded evaluation
The imported evaluation describes this procedure: log-likelihood-ratio scoring
A Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC columnBenchmarks and results
Release 2026-09-16-d74d282221a9 · 1 evaluation · 1 metric row. Different protocols are not a single leaderboard.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| PhyloGPN: ClinVar 3-prime UTR variant classification Model: PhyloGPN · Benchmark: ClinVar 3-prime UTR variant classification · Dataset: ClinVar 3-prime UTR variants log-likelihood-ratio scoring Author-reported evaluation · Evaluation metadata: needs review | ||
| 0.94 AUROC Unit: fraction · Direction: unknown | Uncertainty: not reported in legacy extract Scored: Not reported · Eligible: Not reported | source checkedA Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column Source checking is not independent reproduction. |
Strengths and limitations
Limitations and conditions
- This is an evidence-limited profile. The recorded evaluation context does not establish performance on other datasets or configurations.A Phylogenetic Approach to Genomic Language Modeling · Table 1, 3-prime UTR row, PhyloGPN AUROC column
Profile review details
Reviewed the existing release record, its source pointer and linked evaluation context. This is not a fresh full-text architecture review or independent reproduction; numerical review status is unchanged.
Stable record: reported-model-cbbe04b826ceffSources and history
Release 2026-09-16-d74d282221a9 · Record review: needs review
- A Phylogenetic Approach to Genomic Language Modeling · Original source · preprint version in PMC
Technical metadata and extraction receipts
Stable ID: reported-model-cbbe04b826ceff
- areas
- dna-genomes
- entity level
- method
- version
- not stated in table
- reported name
- PhyloGPN
- missing metadata
- checkpoint revision: not_reported_in_legacy_extract; training data: not_reported_in_legacy_extract; licence: not_reported_in_legacy_extract