IRED
Source-defined subset: IRED. Exact membership and scoring coverage remain as reported in the cited artifact.
Evaluation results
Release 2026-09-19-eb6149e5d766 · 9 evaluations · 18 metric rows. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| CARP-640M likelihood · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: CARP-640M likelihoodProtocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.144 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row CARP-640M likelihood; column spearman Source checking is not independent reproduction. |
| 0.956 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row CARP-640M likelihood; column ndcg Source checking is not independent reproduction. |
| ESMC-300M naive supervised · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: ESMC-300M naive supervisedProtocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.106 ± 0.005 spearman Unit: correlation · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.005; type: unreported; value: 0.005 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row ESMC-300M naive supervised; column spearman Source checking is not independent reproduction. |
| 0.949 ± 0.001 ndcg Unit: unitless · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.001; type: unreported; value: 0.001 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row ESMC-300M naive supervised; column ndcg Source checking is not independent reproduction. |
| Dayhoff likelihood · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: Dayhoff likelihoodProtocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.955 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row Dayhoff likelihood; column ndcg Source checking is not independent reproduction. |
| 0.142 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row Dayhoff likelihood; column spearman Source checking is not independent reproduction. |
| Ridge (one-hot + likelihoods) · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: Ridge (one-hot + likelihoods)Protocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.211 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row Ridge (one-hot + likelihoods); column spearman Source checking is not independent reproduction. |
| 0.964 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row Ridge (one-hot + likelihoods); column ndcg Source checking is not independent reproduction. |
| ESM2-650M likelihood · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: ESM2-650M likelihoodProtocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.141 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row ESM2-650M likelihood; column spearman Source checking is not independent reproduction. |
| 0.953 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row ESM2-650M likelihood; column ndcg Source checking is not independent reproduction. |
| CARP-640M naive supervised · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: CARP-640M naive supervisedProtocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.012 ± 0.017 spearman Unit: correlation · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.017; type: unreported; value: 0.017 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row CARP-640M naive supervised; column spearman Source checking is not independent reproduction. |
| 0.944 ± 0.001 ndcg Unit: unitless · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.001; type: unreported; value: 0.001 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row CARP-640M naive supervised; column ndcg Source checking is not independent reproduction. |
| CARP-640M supervised · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: CARP-640M supervisedProtocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.948 ± 0.004 ndcg Unit: unitless · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.004; type: unreported; value: 0.004 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row CARP-640M supervised; column ndcg Source checking is not independent reproduction. |
| 0.072 ± 0.046 spearman Unit: correlation · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.046; type: unreported; value: 0.046 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row CARP-640M supervised; column spearman Source checking is not independent reproduction. |
| Ridge (one-hot) · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: Ridge (one-hot)Protocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.193 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row Ridge (one-hot); column spearman Source checking is not independent reproduction. |
| 0.960 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row Ridge (one-hot); column ndcg Source checking is not independent reproduction. |
| ESMC-300M supervised · FLIP2 IRED two-to-many; held-out test set · IRED Configuration: ESMC-300M supervisedProtocol: FLIP2 IRED two-to-many; held-out test set · IREDDataset subset: IRED FLIP2 IRED two-to-many; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.954 ± 0.002 ndcg Unit: unitless · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.002; type: unreported; value: 0.002 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row ESMC-300M supervised; column ndcg Source checking is not independent reproduction. |
| 0.160 ± 0.022 spearman Unit: correlation · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.022; type: unreported; value: 0.022 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A5; row ESMC-300M supervised; column spearman Source checking is not independent reproduction. |
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
3 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.source_locator Table A5; row Ridge (one-hot); column spearman Context-only references | FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications Table A5; row Ridge (one-hot); column spearman Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description Source-defined subset: IRED. Exact membership and scoring coverage remain as reported in the cited artifact. Context-only references | FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications Table A5; row Ridge (one-hot); column spearman Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name IRED Context-only references | FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications Table A5; row Ridge (one-hot); column spearman Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
View linked audit checks and correction history
Release 2026-09-19-eb6149e5d766 · Record review: discovered
1 source records and release history
- FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: acquired-dataset-69828ada54ffa9b99628
- source locator
- Table A5; row Ridge (one-hot); column spearman
- missing metadata
- split manifest: unextracted
Related records
- dataset: CARP-640M likelihood · FLIP2 IRED two-to-many; held-out test set · IRED
- dataset: Ridge (one-hot) · FLIP2 IRED two-to-many; held-out test set · IRED
- dataset: ESMC-300M supervised · FLIP2 IRED two-to-many; held-out test set · IRED
- dataset: ESMC-300M naive supervised · FLIP2 IRED two-to-many; held-out test set · IRED
- dataset: CARP-640M naive supervised · FLIP2 IRED two-to-many; held-out test set · IRED
- dataset: Ridge (one-hot + likelihoods) · FLIP2 IRED two-to-many; held-out test set · IRED
- dataset: ESM2-650M likelihood · FLIP2 IRED two-to-many; held-out test set · IRED
- dataset: Dayhoff likelihood · FLIP2 IRED two-to-many; held-out test set · IRED
- dataset: CARP-640M supervised · FLIP2 IRED two-to-many; held-out test set · IRED