PDZ3
Source-defined subset: PDZ3. Exact membership and scoring coverage remain as reported in the cited artifact.
Evaluation results
Release 2026-09-19-eb6149e5d766 · 9 evaluations · 17 metric rows. Different protocols are not a single leaderboard. Charts retain each source table’s protocol and dataset.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| ESMC-300M naive supervised · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: ESMC-300M naive supervisedProtocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.880 ± 0.006 ndcg Unit: unitless · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.006; type: unreported; value: 0.006 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row ESMC-300M naive supervised; column ndcg Source checking is not independent reproduction. |
| Dayhoff likelihood · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: Dayhoff likelihoodProtocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.856 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row Dayhoff likelihood; column ndcg Source checking is not independent reproduction. |
| −0.007 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row Dayhoff likelihood; column spearman Source checking is not independent reproduction. |
| ESMC-300M supervised · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: ESMC-300M supervisedProtocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.499 ± 0.018 spearman Unit: correlation · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.018; type: unreported; value: 0.018 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row ESMC-300M supervised; column spearman Source checking is not independent reproduction. |
| 0.889 ± 0.011 ndcg Unit: unitless · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.011; type: unreported; value: 0.011 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row ESMC-300M supervised; column ndcg Source checking is not independent reproduction. |
| CARP-640M likelihood · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: CARP-640M likelihoodProtocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.863 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row CARP-640M likelihood; column ndcg Source checking is not independent reproduction. |
| 0.043 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row CARP-640M likelihood; column spearman Source checking is not independent reproduction. |
| CARP-640M naive supervised · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: CARP-640M naive supervisedProtocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.870 ± 0.008 ndcg Unit: unitless · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.008; type: unreported; value: 0.008 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row CARP-640M naive supervised; column ndcg Source checking is not independent reproduction. |
| 0.464 ± 0.022 spearman Unit: correlation · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.022; type: unreported; value: 0.022 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row CARP-640M naive supervised; column spearman Source checking is not independent reproduction. |
| Ridge (one-hot) · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: Ridge (one-hot)Protocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.873 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row Ridge (one-hot); column ndcg Source checking is not independent reproduction. |
| 0.476 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row Ridge (one-hot); column spearman Source checking is not independent reproduction. |
| Ridge (one-hot + likelihoods) · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: Ridge (one-hot + likelihoods)Protocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.875 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row Ridge (one-hot + likelihoods); column ndcg Source checking is not independent reproduction. |
| 0.478 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row Ridge (one-hot + likelihoods); column spearman Source checking is not independent reproduction. |
| CARP-640M supervised · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: CARP-640M supervisedProtocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.882 ± 0.015 ndcg Unit: unitless · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.015; type: unreported; value: 0.015 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row CARP-640M supervised; column ndcg Source checking is not independent reproduction. |
| 0.512 ± 0.014 spearman Unit: correlation · Direction: higher Aggregation: mean of five random-seed fits (Section 4.3) | Uncertainty: printed spread: 0.014; type: unreported; value: 0.014 Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row CARP-640M supervised; column spearman Source checking is not independent reproduction. |
| ESM2-650M likelihood · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3 Configuration: ESM2-650M likelihoodProtocol: FLIP2 PDZ3 single-to-double; held-out test set · PDZ3Dataset subset: PDZ3 FLIP2 PDZ3 single-to-double; held-out test set Author-reported evaluation · Evaluation metadata: discovered | ||
| 0.048 spearman Unit: correlation · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row ESM2-650M likelihood; column spearman Source checking is not independent reproduction. |
| 0.854 ndcg Unit: unitless · Direction: higher Aggregation: reported point estimate | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedFLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Table A16; row ESM2-650M likelihood; column ndcg Source checking is not independent reproduction. |
Subset and evaluation context
This record describes a particular subset or cohort used in an evaluation. Its results do not describe the full dataset.
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.
3 evidence rows matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| attributes.source_locator Table A16; row Ridge (one-hot); column spearman Context-only references | FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications Table A16; row Ridge (one-hot); column spearman Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| description Source-defined subset: PDZ3. Exact membership and scoring coverage remain as reported in the cited artifact. Context-only references | FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications Table A16; row Ridge (one-hot); column spearman Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
| name PDZ3 Context-only references | FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications Table A16; row Ridge (one-hot); column spearman Version: Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256 | not individually reviewed No individual claim review recorded Audit detailsField: Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
View linked audit checks and correction history
Release 2026-09-19-eb6149e5d766 · Record review: discovered
1 source records and release history
- FLIP2: Expanding Protein Fitness Landscape Benchmarks for Real-World Machine Learning Applications · Original source · Primary full-text snapshot retrieved 2026-09-17; exact bytes pinned by SHA-256
Technical metadata and extraction receipts
Stable ID: acquired-dataset-c0b872db3e1acc9bfa1c
- source locator
- Table A16; row Ridge (one-hot); column spearman
- missing metadata
- split manifest: unextracted
Related records
- dataset: Ridge (one-hot) · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3
- dataset: CARP-640M supervised · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3
- dataset: ESM2-650M likelihood · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3
- dataset: Ridge (one-hot + likelihoods) · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3
- dataset: Dayhoff likelihood · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3
- dataset: ESMC-300M naive supervised · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3
- dataset: ESMC-300M supervised · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3
- dataset: CARP-640M naive supervised · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3
- dataset: CARP-640M likelihood · FLIP2 PDZ3 single-to-double; held-out test set · PDZ3