Task

Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score

Label projection on CeNGEN (split by batch), Macro F1 score. Scored with Macro F1 score on CeNGEN (split by batch). 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type).

16 evaluations · 16 metric rows

Overview

Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.

Evaluation design

Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.

Benchmarks

Open Problems

These source-backed links do not make different protocols or scores interchangeable.

Recorded evaluations

Each evaluation records what was tested and under which conditions.

Explore all linked results

Run instructions

No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.

A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.

Published comparisons

Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.

Comparison and metric

Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score

f1-macro (fraction) · Higher values are better for this metric.

Every method Open Problems label projection reports on Label projection on CeNGEN (split by batch), Macro F1 score, scored with Macro F1 score on CeNGEN (split by batch).

Evaluation protocol · CeNGEN (split by batch) (Open Problems label projection split)

True Labels · Method · Author-reported evaluation1
Majority Vote · Configuration · Author-reported evaluation0.0005289794984702484
Random Labels · Method · Author-reported evaluation0.002184516197432137
K-neighbors classifier (log CP10k) · Configuration · Author-reported evaluation0.39834484361073036
Logistic regression (log CP10k) · Configuration · Author-reported evaluation0.5108683585871248
Multilayer perceptron (log CP10k) · Configuration · Author-reported evaluation0.402588128174668
K-neighbors classifier (log scran) · Configuration · Author-reported evaluation0.3507138447877583
Logistic regression (log scran) · Configuration · Author-reported evaluation0.48353704258985897
Multilayer perceptron (log scran) · Configuration · Author-reported evaluation0.48583701291538395
Seurat reference mapping (SCTransform) · Configuration · Author-reported evaluation0.4796671443590633
XGBoost (log CP10k) · Configuration · Author-reported evaluation0.4645690989104674
XGBoost (log scran) · Configuration · Author-reported evaluation0.4723773954428312
scANVI (Seurat v3 2000 HVG) · Configuration · Author-reported evaluation0.16123904954334095
scArches+scANVI (Seurat v3 2000 HVG) · Configuration · Author-reported evaluation0.036846248365176415
scArches+scANVI (All genes) · Configuration · Author-reported evaluation0.09068453934420202
scANVI (All genes) · Configuration · Author-reported evaluation0.19725738168553295

Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.

openproblems-label primary benchmark evidence · results, dataset(cengen_batch), metric(f1_macro)

Values, uncertainty and evidence

f1-macro: original source values
Tested entity	Printed value	Uncertainty	Evidence
True Labels · Method	1 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(true_labels), paramset(none), metric(f1_macro)
Majority Vote · Configuration	0.0005289794984702484 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(majority_vote), paramset(none), metric(f1_macro)
Random Labels · Method	0.002184516197432137 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(random_labels), paramset(none), metric(f1_macro)
K-neighbors classifier (log CP10k) · Configuration	0.39834484361073036 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(k_neighbors_classifier), paramset(log CP10k), metric(f1_macro)
Logistic regression (log CP10k) · Configuration	0.5108683585871248 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(logistic_regression), paramset(log CP10k), metric(f1_macro)
Multilayer perceptron (log CP10k) · Configuration	0.402588128174668 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(multilayer_perceptron), paramset(log CP10k), metric(f1_macro)
K-neighbors classifier (log scran) · Configuration	0.3507138447877583 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro)
Logistic regression (log scran) · Configuration	0.48353704258985897 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(logistic_regression), paramset(log scran), metric(f1_macro)
Multilayer perceptron (log scran) · Configuration	0.48583701291538395 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(multilayer_perceptron), paramset(log scran), metric(f1_macro)
Seurat reference mapping (SCTransform) · Configuration	0.4796671443590633 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(seurat_reference_mapping), paramset(SCTransform), metric(f1_macro)
XGBoost (log CP10k) · Configuration	0.4645690989104674 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(xgboost), paramset(log CP10k), metric(f1_macro)
XGBoost (log scran) · Configuration	0.4723773954428312 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(xgboost), paramset(log scran), metric(f1_macro)
scANVI (Seurat v3 2000 HVG) · Configuration	0.16123904954334095 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro)
scArches+scANVI (Seurat v3 2000 HVG) · Configuration	0.036846248365176415 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scarches_scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro)
scArches+scANVI (All genes) · Configuration	0.09068453934420202 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scarches_scanvi), paramset(All genes), metric(f1_macro)
scANVI (All genes) · Configuration	0.19725738168553295 fraction	Not reported	Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scanvi), paramset(All genes), metric(f1_macro)

Scope and limitations

Results published by the Open Problems project, source checked but not independently reproduced.
This covers the label projection task at v1.0.0 only, not the whole Open Problems suite.
true_labels and random_labels are controls that bound the scale, not competing methods.
Preprocessing is part of the run, so the same method appears once per parameter set.

Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.

Tested entities and results

Release 2026-09-17-134cd1815de8 · 16 evaluations · 16 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.

Evaluation setupMetricEvidence origin

Results grouped by the exact reported evaluation
Metric and finding	Coverage and uncertainty	Evidence
K-neighbors classifier (log CP10k) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: K-neighbors classifier (log CP10k)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.39834484361073036 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(k_neighbors_classifier), paramset(log CP10k), metric(f1_macro) Source checking is not independent reproduction.
K-neighbors classifier (log scran) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.3507138447877583 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction.
Logistic regression (log CP10k) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: Logistic regression (log CP10k)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.5108683585871248 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(logistic_regression), paramset(log CP10k), metric(f1_macro) Source checking is not independent reproduction.
Logistic regression (log scran) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: Logistic regression (log scran)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.48353704258985897 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(logistic_regression), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction.
Majority Vote on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: Majority VoteTask: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.0005289794984702484 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(majority_vote), paramset(none), metric(f1_macro) Source checking is not independent reproduction.
Multilayer perceptron (log CP10k) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: Multilayer perceptron (log CP10k)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.402588128174668 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(multilayer_perceptron), paramset(log CP10k), metric(f1_macro) Source checking is not independent reproduction.
Multilayer perceptron (log scran) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: Multilayer perceptron (log scran)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.48583701291538395 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(multilayer_perceptron), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction.
Random Labels on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Method: Random LabelsTask: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.002184516197432137 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(random_labels), paramset(none), metric(f1_macro) Source checking is not independent reproduction.
scANVI (All genes) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: scANVI (All genes)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.19725738168553295 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scanvi), paramset(All genes), metric(f1_macro) Source checking is not independent reproduction.
scANVI (Seurat v3 2000 HVG) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: scANVI (Seurat v3 2000 HVG)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.16123904954334095 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Source checking is not independent reproduction.
scArches+scANVI (All genes) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: scArches+scANVI (All genes)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.09068453934420202 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scarches_scanvi), paramset(All genes), metric(f1_macro) Source checking is not independent reproduction.
scArches+scANVI (Seurat v3 2000 HVG) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: scArches+scANVI (Seurat v3 2000 HVG)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.036846248365176415 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(scarches_scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Source checking is not independent reproduction.
Seurat reference mapping (SCTransform) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: Seurat reference mapping (SCTransform)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.4796671443590633 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(seurat_reference_mapping), paramset(SCTransform), metric(f1_macro) Source checking is not independent reproduction.
True Labels on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Method: True LabelsTask: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
1 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(true_labels), paramset(none), metric(f1_macro) Source checking is not independent reproduction.
XGBoost (log CP10k) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: XGBoost (log CP10k)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.4645690989104674 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(xgboost), paramset(log CP10k), metric(f1_macro) Source checking is not independent reproduction.
XGBoost (log scran) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: XGBoost (log scran)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked
0.4723773954428312 f1-macro Unit: fraction · Direction: higher	Uncertainty: Not reported Scored: Not reported · Eligible: Not reported	source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(xgboost), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction.

Evidence table

Inspect claims, sources and review details

Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.

One row per statement and cited source. Multiple citations are not independent evaluations. Shared locators are labelled explicitly.

1 evidence row matching the loaded filters

Claims, original sources and review scope · Release 2026-09-17-134cd1815de8
Property and statement	Original source and location	Review and provenance
Relationship: part of discovery-benchmark-open-problems Individual claims	openproblems-label primary benchmark evidence Original source ↗ results, dataset(cengen_batch), metric(f1_macro) Version: v1.0.0 Retrieved: 2026-09-16T21:16:30.026457+00:00	source checked automated source review · 2026-09-18 Audit details Primary-source transcription with no human sign-off and no independent reproduction. Field: `links:part_of:discovery-benchmark-open-problems` Claim: open-problems-association-cengen-batch-f1-macro Source artifact SHA-256: `e223ab712ff55997a3abe659f280d4ea2952700e767b87e02c434701da9833c1` Hash scope: Exact retrieved primary paper artifact bytes. Inspected artifact

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Sources and history

Release 2026-09-17-134cd1815de8 · Record review: source checked

1 source records and release history

openproblems-label primary benchmark evidence · Original source · v1.0.0

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Technical metadata and extraction receipts

Stable ID: open-problems-task-cengen-batch-f1-macro

areas: cells-tissues
tasks: Label projection on CeNGEN (split by batch), Macro F1 score
metric: Macro F1 score
metric direction: higher
dataset: CeNGEN (split by batch)
protocol: 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type).
source locator: results, dataset(cengen_batch), metric(f1_macro)
comparison panels: id: open-problems-panel-cengen-batch-f1-macro; title: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score; protocol id: open-problems-task-cengen-batch-f1-macro; dataset id: open-problems-dataset-cengen-split-by-batch; metric: f1-macro; unit: fraction; direction: higher; result ids: open-problems-result-true-labels-cengen-batch-f1-macro-f1-macro; open-problems-result-majority-vote-cengen-batch-f1-macro-f1-macro; open-problems-result-random-labels-cengen-batch-f1-macro-f1-macro; open-problems-result-k-neighbors-classifier-log-cp10k-cengen-batch-f1-macro-f1-macro; open-problems-result-logistic-regression-log-cp10k-cengen-batch-f1-macro-f1-macro; open-problems-result-multilayer-perceptron-log-cp10k-cengen-batch-f1-macro-f1-macro; open-problems-result-k-neighbors-classifier-log-scran-cengen-batch-f1-macro-f1-macro; open-problems-result-logistic-regression-log-scran-cengen-batch-f1-macro-f1-macro; open-problems-result-multilayer-perceptron-log-scran-cengen-batch-f1-macro-f1-macro; open-problems-result-seurat-reference-mapping-sctransform-cengen-batch-f1-macro-f1-macro; open-problems-result-xgboost-log-cp10k-cengen-batch-f1-macro-f1-macro; open-problems-result-xgboost-log-scran-cengen-batch-f1-macro-f1-macro; open-problems-result-scanvi-seurat-v3-2000-hvg-cengen-batch-f1-macro-f1-macro; open-problems-result-scarches-plus-scanvi-seurat-v3-2000-hvg-cengen-batch-f1-macro-f1-macro; open-problems-result-scarches-plus-scanvi-all-genes-cengen-batch-f1-macro-f1-macro; open-problems-result-scanvi-all-genes-cengen-batch-f1-macro-f1-macro; source ids: expansion-p3-open-problems; source locator: results, dataset(cengen_batch), metric(f1_macro); context: Every method Open Problems label projection reports on Label projection on CeNGEN (split by batch), Macro F1 score, scored with Macro F1 score on CeNGEN (split by batch).; caveats: Results published by the Open Problems project, source checked but not independently reproduced.; This covers the label projection task at v1.0.0 only, not the whole Open Problems suite.; true_labels and random_labels are controls that bound the scale, not competing methods.; Preprocessing is part of the run, so the same method appears once per parameter set.; review: method: automated_source_review; date: 2026-09-18

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