K-neighbors classifier (log scran)
K-neighbors classifier uses the "k-nearest neighbours" approach, which is a popular machine learning algorithm for classification and regression tasks. The assumption underlying KNN in this context is that cells with similar gene expression profiles tend to belong to the same cell type. For each unlabelled cell, this method computes the $k$ labelled cells (in this case, 5) with the smallest distance in PCA space, and assigns that cell the most common cell type among its $k$ nearest neighbors.
Overview
K-neighbors classifier uses the "k-nearest neighbours" approach, which is a popular machine learning algorithm for classification and regression tasks. The assumption underlying KNN in this context is that cells with similar gene expression profiles tend to belong to the same cell type. For each unlabelled cell, this method computes the $k$ labelled cells (in this case, 5) with the smallest distance in PCA space, and assigns that cell the most common cell type among its $k$ nearest neighbors.
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluations and results
Release 2026-09-17-134cd1815de8 · 24 evaluations · 24 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| K-neighbors classifier (log scran) on Open Problems label projection CENGEN-BATCH-ACCURACY: Label projection on CeNGEN (split by batch), Accuracy Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection CENGEN-BATCH-ACCURACY: Label projection on CeNGEN (split by batch), AccuracyDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.7872977831036548 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(k_neighbors_classifier), paramset(log scran), metric(accuracy) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection CENGEN-BATCH-F1: Label projection on CeNGEN (split by batch), F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8046070625910249 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(k_neighbors_classifier), paramset(log scran), metric(f1) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection CENGEN-BATCH-F1-MACRO: Label projection on CeNGEN (split by batch), Macro F1 scoreDataset subset: CeNGEN (split by batch) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test by experimental batch. Dimensions: 100955 cells, 22469 genes. 169 cell types (avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.3507138447877583 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_batch), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection CENGEN-RANDOM-ACCURACY: Label projection on CeNGEN (random split), Accuracy Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection CENGEN-RANDOM-ACCURACY: Label projection on CeNGEN (random split), AccuracyDataset subset: CeNGEN (random split) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test randomly. Dimensions: 100955 cells, 22469 genes. 169 cell types avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8380274730704615 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_random), method(k_neighbors_classifier), paramset(log scran), metric(accuracy) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection CENGEN-RANDOM-F1: Label projection on CeNGEN (random split), F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection CENGEN-RANDOM-F1: Label projection on CeNGEN (random split), F1 scoreDataset subset: CeNGEN (random split) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test randomly. Dimensions: 100955 cells, 22469 genes. 169 cell types avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8369482993272568 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_random), method(k_neighbors_classifier), paramset(log scran), metric(f1) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection CENGEN-RANDOM-F1-MACRO: Label projection on CeNGEN (random split), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection CENGEN-RANDOM-F1-MACRO: Label projection on CeNGEN (random split), Macro F1 scoreDataset subset: CeNGEN (random split) (Open Problems label projection split) 100k FACS-isolated C. elegans neurons from 17 experiments sequenced on 10x Genomics. Split into train/test randomly. Dimensions: 100955 cells, 22469 genes. 169 cell types avg. 597±800 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.7495378715122704 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(cengen_random), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-BATCH-ACCURACY: Label projection on Pancreas (by batch), Accuracy Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-BATCH-ACCURACY: Label projection on Pancreas (by batch), AccuracyDataset subset: Pancreas (by batch) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test by experimental batch. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8290505815526102 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_batch), method(k_neighbors_classifier), paramset(log scran), metric(accuracy) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-BATCH-F1: Label projection on Pancreas (by batch), F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-BATCH-F1: Label projection on Pancreas (by batch), F1 scoreDataset subset: Pancreas (by batch) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test by experimental batch. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.832422691059586 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_batch), method(k_neighbors_classifier), paramset(log scran), metric(f1) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-BATCH-F1-MACRO: Label projection on Pancreas (by batch), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-BATCH-F1-MACRO: Label projection on Pancreas (by batch), Macro F1 scoreDataset subset: Pancreas (by batch) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test by experimental batch. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.5774678768528779 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_batch), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-ACCURACY: Label projection on Pancreas (random split), Accuracy Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-RANDOM-ACCURACY: Label projection on Pancreas (random split), AccuracyDataset subset: Pancreas (random split) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.9644376899696049 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_random), method(k_neighbors_classifier), paramset(log scran), metric(accuracy) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-F1: Label projection on Pancreas (random split), F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-RANDOM-F1: Label projection on Pancreas (random split), F1 scoreDataset subset: Pancreas (random split) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.963539669184525 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_random), method(k_neighbors_classifier), paramset(log scran), metric(f1) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-F1-MACRO: Label projection on Pancreas (random split), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-RANDOM-F1-MACRO: Label projection on Pancreas (random split), Macro F1 scoreDataset subset: Pancreas (random split) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.7715105401247113 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_random), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-ACCURACY: Label projection on Pancreas (random split with label noise), Accuracy Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-ACCURACY: Label projection on Pancreas (random split with label noise), AccuracyDataset subset: Pancreas (random split with label noise) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.9411402157164869 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_random_label_noise), method(k_neighbors_classifier), paramset(log scran), metric(accuracy) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1: Label projection on Pancreas (random split with label noise), F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1: Label projection on Pancreas (random split with label noise), F1 scoreDataset subset: Pancreas (random split with label noise) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.9404360005933883 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_random_label_noise), method(k_neighbors_classifier), paramset(log scran), metric(f1) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 scoreDataset subset: Pancreas (random split with label noise) (Open Problems label projection split) Human pancreatic islet scRNA-seq data from 6 datasets across technologies (CEL-seq, CEL-seq2, Smart-seq2, inDrop, Fluidigm C1, and SMARTER-seq). Split into train/test randomly with 20% label noise. Dimensions: 16382 cells, 18771 genes. 14 cell types (avg. 1170±1703 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.7218714554626218 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(pancreas_random_label_noise), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-ACCURACY: Label projection on Tabula Muris Senis Lung (random split), Accuracy Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-ACCURACY: Label projection on Tabula Muris Senis Lung (random split), AccuracyDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8686058174523571 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(k_neighbors_classifier), paramset(log scran), metric(accuracy) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1: Label projection on Tabula Muris Senis Lung (random split), F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1: Label projection on Tabula Muris Senis Lung (random split), F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8638651253107504 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(k_neighbors_classifier), paramset(log scran), metric(f1) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8275820800516215 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-ACCURACY: Label projection on Zebrafish (by laboratory), Accuracy Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection ZEBRAFISH-LABS-ACCURACY: Label projection on Zebrafish (by laboratory), AccuracyDataset subset: Zebrafish (by laboratory) (Open Problems label projection split) 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test by laboratory. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.1913844556896328 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(zebrafish_labs), method(k_neighbors_classifier), paramset(log scran), metric(accuracy) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-F1: Label projection on Zebrafish (by laboratory), F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection ZEBRAFISH-LABS-F1: Label projection on Zebrafish (by laboratory), F1 scoreDataset subset: Zebrafish (by laboratory) (Open Problems label projection split) 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test by laboratory. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.2018575253249313 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(zebrafish_labs), method(k_neighbors_classifier), paramset(log scran), metric(f1) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-F1-MACRO: Label projection on Zebrafish (by laboratory), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection ZEBRAFISH-LABS-F1-MACRO: Label projection on Zebrafish (by laboratory), Macro F1 scoreDataset subset: Zebrafish (by laboratory) (Open Problems label projection split) 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test by laboratory. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.1995615455583369 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(zebrafish_labs), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-ACCURACY: Label projection on Zebrafish (random split), Accuracy Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection ZEBRAFISH-RANDOM-ACCURACY: Label projection on Zebrafish (random split), AccuracyDataset subset: Zebrafish (random split) (Open Problems label projection split) 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test randomly. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8022041763341067 accuracy Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(zebrafish_random), method(k_neighbors_classifier), paramset(log scran), metric(accuracy) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-F1: Label projection on Zebrafish (random split), F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection ZEBRAFISH-RANDOM-F1: Label projection on Zebrafish (random split), F1 scoreDataset subset: Zebrafish (random split) (Open Problems label projection split) 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test randomly. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8026197598424966 f1 Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(zebrafish_random), method(k_neighbors_classifier), paramset(log scran), metric(f1) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-F1-MACRO: Label projection on Zebrafish (random split), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection ZEBRAFISH-RANDOM-F1-MACRO: Label projection on Zebrafish (random split), Macro F1 scoreDataset subset: Zebrafish (random split) (Open Problems label projection split) 90k cells from zebrafish embryos throughout the first day of development, with and without a knockout of chordin, an important developmental gene. Split into train/test randomly. Dimensions: 26022 cells, 25258 genes. 24 cell types (avg. 1084±1156 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.6493289517704377 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(zebrafish_random), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
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Related records
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- model: K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-F1-MACRO: Label projection on Pancreas (random split), Macro F1 score
- model: K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-ACCURACY: Label projection on Pancreas (random split with label noise), Accuracy
- model: K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1: Label projection on Pancreas (random split with label noise), F1 score
- model: K-neighbors classifier (log scran) on Open Problems label projection PANCREAS-RANDOM-LABEL-NOISE-F1-MACRO: Label projection on Pancreas (random split with label noise), Macro F1 score
- model: K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-ACCURACY: Label projection on Tabula Muris Senis Lung (random split), Accuracy
- model: K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1: Label projection on Tabula Muris Senis Lung (random split), F1 score
- model: K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- model: K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-ACCURACY: Label projection on Zebrafish (by laboratory), Accuracy
- model: K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-F1: Label projection on Zebrafish (by laboratory), F1 score
- model: K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-LABS-F1-MACRO: Label projection on Zebrafish (by laboratory), Macro F1 score
- model: K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-ACCURACY: Label projection on Zebrafish (random split), Accuracy
- model: K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-F1: Label projection on Zebrafish (random split), F1 score
- model: K-neighbors classifier (log scran) on Open Problems label projection ZEBRAFISH-RANDOM-F1-MACRO: Label projection on Zebrafish (random split), Macro F1 score