Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
Label projection on Tabula Muris Senis Lung (random split), Macro F1 score. Scored with Macro F1 score on Tabula Muris Senis Lung (random split). All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type).
Overview
Label projection on Tabula Muris Senis Lung (random split), Macro F1 score. Scored with Macro F1 score on Tabula Muris Senis Lung (random split). All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type).
Consult the linked sources for architecture or protocol details. Missing evidence is not evidence of a missing capability.
Evaluation design
Benchmarks bring together tasks and protocols. A task describes the biological question; a protocol defines a particular test.
Benchmarks
These source-backed links do not make different protocols or scores interchangeable.
Recorded evaluations
Each evaluation records what was tested and under which conditions.
- K-neighbors classifier (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- Logistic regression (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- Logistic regression (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- Majority Vote on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- Multilayer perceptron (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- Multilayer perceptron (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- Random Labels on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- scANVI (All genes) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- scANVI (Seurat v3 2000 HVG) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- scArches+scANVI (All genes) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- scArches+scANVI (Seurat v3 2000 HVG) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
Run instructions
No runnable recipe has been reviewed for this task. Dataset access, model requirements, licences and compute requirements must be checked against its sources before execution.
A task describes a biological question. Choose a linked protocol to obtain concrete split and scoring instructions.
Published comparisons
Explore the results reported under one evaluation protocol. Each figure keeps its source, dataset and metric together; it is not a ranking across studies. The pooled view gathers every source table that reports the same metric and names what it does not hold constant.
Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
f1-macro (fraction) · Higher values are better for this metric.
Every method Open Problems label projection reports on Label projection on Tabula Muris Senis Lung (random split), Macro F1 score, scored with Macro F1 score on Tabula Muris Senis Lung (random split).
Evaluation protocol · Tabula Muris Senis Lung (random split) (Open Problems label projection split)
- K-neighbors classifier (log CP10k) · Configuration · Author-reported evaluation0.8714241831337218
- Logistic regression (log CP10k) · Configuration · Author-reported evaluation0.9131036540313611
- True Labels · Method · Author-reported evaluation1
- Majority Vote · Configuration · Author-reported evaluation0.009346187495793795
- Random Labels · Method · Author-reported evaluation0.025324511313610666
- Multilayer perceptron (log CP10k) · Configuration · Author-reported evaluation0.9072989997095794
- K-neighbors classifier (log scran) · Configuration · Author-reported evaluation0.8275820800516215
- XGBoost (log CP10k) · Configuration · Author-reported evaluation0.797480077558899
- Logistic regression (log scran) · Configuration · Author-reported evaluation0.8758263593202537
- XGBoost (log scran) · Configuration · Author-reported evaluation0.8174603029898384
- Seurat reference mapping (SCTransform) · Configuration · Author-reported evaluation0.8526389520351096
- Multilayer perceptron (log scran) · Configuration · Author-reported evaluation0.8914942538629572
- scANVI (Seurat v3 2000 HVG) · Configuration · Author-reported evaluation0.39398162218102567
- scArches+scANVI (All genes) · Configuration · Author-reported evaluation0.2807778194761088
- scArches+scANVI (Seurat v3 2000 HVG) · Configuration · Author-reported evaluation0.23443165472180164
- scANVI (All genes) · Configuration · Author-reported evaluation0.43557549460855116
Source order is preserved. Plotted marks show point estimates; uncertainty, where reported, is retained in the printed values and table. Differences do not establish statistical significance.
openproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), metric(f1_macro)Values, uncertainty and evidence
| Tested entity | Printed value | Uncertainty | Evidence |
|---|---|---|---|
| K-neighbors classifier (log CP10k) · Configuration | 0.8714241831337218 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(k_neighbors_classifier), paramset(log CP10k), metric(f1_macro) |
| Logistic regression (log CP10k) · Configuration | 0.9131036540313611 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(logistic_regression), paramset(log CP10k), metric(f1_macro) |
| True Labels · Method | 1 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(true_labels), paramset(none), metric(f1_macro) |
| Majority Vote · Configuration | 0.009346187495793795 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(majority_vote), paramset(none), metric(f1_macro) |
| Random Labels · Method | 0.025324511313610666 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(random_labels), paramset(none), metric(f1_macro) |
| Multilayer perceptron (log CP10k) · Configuration | 0.9072989997095794 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(multilayer_perceptron), paramset(log CP10k), metric(f1_macro) |
| K-neighbors classifier (log scran) · Configuration | 0.8275820800516215 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) |
| XGBoost (log CP10k) · Configuration | 0.797480077558899 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(xgboost), paramset(log CP10k), metric(f1_macro) |
| Logistic regression (log scran) · Configuration | 0.8758263593202537 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(logistic_regression), paramset(log scran), metric(f1_macro) |
| XGBoost (log scran) · Configuration | 0.8174603029898384 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(xgboost), paramset(log scran), metric(f1_macro) |
| Seurat reference mapping (SCTransform) · Configuration | 0.8526389520351096 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(seurat_reference_mapping), paramset(SCTransform), metric(f1_macro) |
| Multilayer perceptron (log scran) · Configuration | 0.8914942538629572 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(multilayer_perceptron), paramset(log scran), metric(f1_macro) |
| scANVI (Seurat v3 2000 HVG) · Configuration | 0.39398162218102567 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) |
| scArches+scANVI (All genes) · Configuration | 0.2807778194761088 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(scarches_scanvi), paramset(All genes), metric(f1_macro) |
| scArches+scANVI (Seurat v3 2000 HVG) · Configuration | 0.23443165472180164 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(scarches_scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) |
| scANVI (All genes) · Configuration | 0.43557549460855116 fraction | Not reported | Author-reported evaluation · source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(scanvi), paramset(All genes), metric(f1_macro) |
Scope and limitations
- Results published by the Open Problems project, source checked but not independently reproduced.
- This covers the label projection task at v1.0.0 only, not the whole Open Problems suite.
- true_labels and random_labels are controls that bound the scale, not competing methods.
- Preprocessing is part of the run, so the same method appears once per parameter set.
Source transcription and grouping reviewed by automated source review on 2026-09-18. These experiments were not independently reproduced by rewire.
Tested entities and results
Release 2026-09-17-134cd1815de8 · 16 evaluations · 16 metric rows. Different protocols are not a single leaderboard. Where several source tables report the same metric, the published comparisons above offer a pooled view that names what it does not hold constant.
| Metric and finding | Coverage and uncertainty | Evidence |
|---|---|---|
| K-neighbors classifier (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: K-neighbors classifier (log CP10k)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8714241831337218 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(k_neighbors_classifier), paramset(log CP10k), metric(f1_macro) Source checking is not independent reproduction. |
| K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: K-neighbors classifier (log scran)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8275820800516215 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(k_neighbors_classifier), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| Logistic regression (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: Logistic regression (log CP10k)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.9131036540313611 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(logistic_regression), paramset(log CP10k), metric(f1_macro) Source checking is not independent reproduction. |
| Logistic regression (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: Logistic regression (log scran)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8758263593202537 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(logistic_regression), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| Majority Vote on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: Majority VoteTask: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.009346187495793795 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(majority_vote), paramset(none), metric(f1_macro) Source checking is not independent reproduction. |
| Multilayer perceptron (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: Multilayer perceptron (log CP10k)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.9072989997095794 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(multilayer_perceptron), paramset(log CP10k), metric(f1_macro) Source checking is not independent reproduction. |
| Multilayer perceptron (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: Multilayer perceptron (log scran)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8914942538629572 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(multilayer_perceptron), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
| Random Labels on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Method: Random LabelsTask: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.025324511313610666 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(random_labels), paramset(none), metric(f1_macro) Source checking is not independent reproduction. |
| scANVI (All genes) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: scANVI (All genes)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.43557549460855116 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(scanvi), paramset(All genes), metric(f1_macro) Source checking is not independent reproduction. |
| scANVI (Seurat v3 2000 HVG) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: scANVI (Seurat v3 2000 HVG)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.39398162218102567 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Source checking is not independent reproduction. |
| scArches+scANVI (All genes) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: scArches+scANVI (All genes)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.2807778194761088 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(scarches_scanvi), paramset(All genes), metric(f1_macro) Source checking is not independent reproduction. |
| scArches+scANVI (Seurat v3 2000 HVG) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: scArches+scANVI (Seurat v3 2000 HVG)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.23443165472180164 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(scarches_scanvi), paramset(Seurat v3 2000 HVG), metric(f1_macro) Source checking is not independent reproduction. |
| Seurat reference mapping (SCTransform) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: Seurat reference mapping (SCTransform)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8526389520351096 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(seurat_reference_mapping), paramset(SCTransform), metric(f1_macro) Source checking is not independent reproduction. |
| True Labels on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Method: True LabelsTask: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 1 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(true_labels), paramset(none), metric(f1_macro) Source checking is not independent reproduction. |
| XGBoost (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: XGBoost (log CP10k)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.797480077558899 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(xgboost), paramset(log CP10k), metric(f1_macro) Source checking is not independent reproduction. |
| XGBoost (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score Configuration: XGBoost (log scran)Task: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 scoreDataset subset: Tabula Muris Senis Lung (random split) (Open Problems label projection split) All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type). Author-reported evaluation · Evaluation metadata: source checked | ||
| 0.8174603029898384 f1-macro Unit: fraction · Direction: higher | Uncertainty: Not reported Scored: Not reported · Eligible: Not reported | source checkedopenproblems-label primary benchmark evidence · results, dataset(tabula_muris_senis_lung_random), method(xgboost), paramset(log scran), metric(f1_macro) Source checking is not independent reproduction. |
Evidence table
Inspect claims, sources and review details
Trace each statement to its source and review. A context-only reference supports the record generally; it does not verify an individual field. Source checking does not reproduce an experiment.
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1 evidence row matching the loaded filters
| Property and statement | Original source and location | Review and provenance |
|---|---|---|
| Relationship: part of discovery-benchmark-open-problems Individual claims | openproblems-label primary benchmark evidence results, dataset(tabula_muris_senis_lung_random), metric(f1_macro) Version: v1.0.0 | source checked automated source review · 2026-09-18 Audit detailsPrimary-source transcription with no human sign-off and no independent reproduction. Field: Claim: open-problems-association-tabula-muris-senis-lung-random-f1-macro Source artifact SHA-256: Hash scope: Exact retrieved primary paper artifact bytes. |
Sources and history
Release 2026-09-17-134cd1815de8 · Record review: source checked
1 source records and release history
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Stable ID: open-problems-task-tabula-muris-senis-lung-random-f1-macro
- areas
- cells-tissues
- tasks
- Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- metric
- Macro F1 score
- metric direction
- higher
- dataset
- Tabula Muris Senis Lung (random split)
- protocol
- All lung cells from Tabula Muris Senis, a 500k cell-atlas from 18 organs and tissues across the mouse lifespan. Split into train/test randomly. Dimensions: 24540 cells, 17985 genes. 39 cell types (avg. 629±999 cells per cell type).
- source locator
- results, dataset(tabula_muris_senis_lung_random), metric(f1_macro)
- comparison panels
- id: open-problems-panel-tabula-muris-senis-lung-random-f1-macro; title: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score; protocol id: open-problems-task-tabula-muris-senis-lung-random-f1-macro; dataset id: open-problems-dataset-tabula-muris-senis-lung-random-split; metric: f1-macro; unit: fraction; direction: higher; result ids: open-problems-result-k-neighbors-classifier-log-cp10k-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-logistic-regression-log-cp10k-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-true-labels-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-majority-vote-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-random-labels-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-multilayer-perceptron-log-cp10k-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-k-neighbors-classifier-log-scran-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-xgboost-log-cp10k-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-logistic-regression-log-scran-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-xgboost-log-scran-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-seurat-reference-mapping-sctransform-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-multilayer-perceptron-log-scran-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-scanvi-seurat-v3-2000-hvg-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-scarches-plus-scanvi-all-genes-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-scarches-plus-scanvi-seurat-v3-2000-hvg-tabula-muris-senis-lung-random-f1-macro-f1-macro; open-problems-result-scanvi-all-genes-tabula-muris-senis-lung-random-f1-macro-f1-macro; source ids: expansion-p3-open-problems; source locator: results, dataset(tabula_muris_senis_lung_random), metric(f1_macro); context: Every method Open Problems label projection reports on Label projection on Tabula Muris Senis Lung (random split), Macro F1 score, scored with Macro F1 score on Tabula Muris Senis Lung (random split).; caveats: Results published by the Open Problems project, source checked but not independently reproduced.; This covers the label projection task at v1.0.0 only, not the whole Open Problems suite.; true_labels and random_labels are controls that bound the scale, not competing methods.; Preprocessing is part of the run, so the same method appears once per parameter set.; review: method: automated_source_review; date: 2026-09-18
Related records
- part of: Open Problems
- subject: Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: part of discovery-benchmark-open-problems
- benchmark: K-neighbors classifier (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: K-neighbors classifier (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: Logistic regression (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: Logistic regression (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: Majority Vote on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: Multilayer perceptron (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: Multilayer perceptron (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: Random Labels on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: scANVI (All genes) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: scANVI (Seurat v3 2000 HVG) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: scArches+scANVI (All genes) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: scArches+scANVI (Seurat v3 2000 HVG) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: Seurat reference mapping (SCTransform) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: True Labels on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: XGBoost (log CP10k) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score
- benchmark: XGBoost (log scran) on Open Problems label projection TABULA-MURIS-SENIS-LUNG-RANDOM-F1-MACRO: Label projection on Tabula Muris Senis Lung (random split), Macro F1 score